Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0186
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 128 5e-30
03_01_0547 + 4093196-4093657,4094267-4095148 128 5e-30
03_01_0544 + 4082528-4082989,4083585-4084466 128 5e-30
03_01_0543 + 4076981-4077442,4078145-4079026 128 5e-30
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 35 0.060
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 32 0.32
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 3.0
01_02_0102 - 11148219-11148563,11148650-11149534 29 3.0
11_01_0246 + 1887680-1887838,1887942-1888064,1888177-1888263,188... 29 4.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 4.0
03_05_0370 + 23541188-23542537 27 9.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 128 bits (308), Expect = 5e-30
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = +1
Query: 7 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 186
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 187 SGDAAIVNLVPSKPLCVESFQEFHP 261
+GDA +V ++P+KP+ VE+F E+ P
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPP 408
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAV 323
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 128 bits (308), Expect = 5e-30
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = +1
Query: 7 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 186
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 187 SGDAAIVNLVPSKPLCVESFQEFHP 261
+GDA +V ++P+KP+ VE+F E+ P
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPP 408
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAV 323
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 128 bits (308), Expect = 5e-30
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = +1
Query: 7 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 186
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 187 SGDAAIVNLVPSKPLCVESFQEFHP 261
+GDA +V ++P+KP+ VE+F E+ P
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPP 408
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAV 323
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 128 bits (308), Expect = 5e-30
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = +1
Query: 7 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 186
EAA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383
Query: 187 SGDAAIVNLVPSKPLCVESFQEFHP 261
+GDA +V ++P+KP+ VE+F E+ P
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPP 408
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAV 323
PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKNV 429
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 34.7 bits (76), Expect = 0.060
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +1
Query: 28 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-------IK 186
Q++ L + GY VL H+ C+ ++ E++D + K + K +K
Sbjct: 324 QILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVK 383
Query: 187 SGDAAIVNLVPSKPLCVESFQEF 255
+G + + + +C+E+F +F
Sbjct: 384 NGAVVVCRIQVNNLICIENFSDF 406
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 103 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESF 246
++ +I ++++TGK+++ P+ + S A++ + K +CVE F
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEF 624
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 512 LQPCKKYRKGMSL*P-FFPSK 453
L PCKK +KGM++ P FF SK
Sbjct: 664 LNPCKKQKKGMNILPKFFTSK 684
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 29.1 bits (62), Expect = 3.0
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -1
Query: 448 FR*MKYR--SCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRT 275
F+ MK R + N V S S+FLP+V F+A PPP ALM V + R+
Sbjct: 259 FKVMKERMYKIISNAIVVSYSHFLPVVPFNA---FNPPPPEF---ALMKSDPPV-VQRRS 311
Query: 274 AKRPRG-GIPGRTLHIEA 224
R G G G +H EA
Sbjct: 312 PHRQTGQGSGGPKIHFEA 329
>11_01_0246 +
1887680-1887838,1887942-1888064,1888177-1888263,
1888401-1888505,1888693-1888854,1889429-1889464,
1889594-1889665,1890270-1890414,1891213-1891505
Length = 393
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 278 DSKTTEGWNSWKDSTHRGLEGTKLT 204
+ + GW+ WKD RG KLT
Sbjct: 366 EEEKARGWDDWKDDNPRGAGNKKLT 390
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 40 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 183
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>03_05_0370 + 23541188-23542537
Length = 449
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 322 TALMTPTAT-VCLMSRTAKRPRGGIPGRTLH 233
TA TPTAT +C M++ R PGR +H
Sbjct: 94 TAGFTPTATTLCTMAKACATSRALRPGRQVH 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,766
Number of Sequences: 37544
Number of extensions: 305774
Number of successful extensions: 909
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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