Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0186
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 134 6e-32
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 37 0.015
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 31 0.76
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 30 1.3
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 30 1.3
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1) 28 7.1
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 134 bits (324), Expect = 6e-32
Identities = 57/81 (70%), Positives = 70/81 (86%)
Frame = +1
Query: 19 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 198
FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK E NPK IK+GDA
Sbjct: 199 FTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDA 258
Query: 199 AIVNLVPSKPLCVESFQEFHP 261
A+V ++PSKP+CVE+F EF P
Sbjct: 259 AMVEMIPSKPMCVETFTEFPP 279
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAVN 326
PPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 278 PPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 136 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 255
+D++TGK + P+ IK AI L +C+E F +F
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDF 535
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 100 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 228
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 188 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 81
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 121 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFHPS 264
EI R TG++TE+N ++ SG+ I +V + C+ Q + P+
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGPT 302
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 288 SCHGQQNDRGVEFLEGLYT*RLGRYQVDNGCISRLDGFWVDFSRFTSTTVN 136
S GQQND E L + Q+D CI RL ++ R ST +N
Sbjct: 476 SRRGQQNDEFAELSHQLPLPKSISSQLDRLCIMRLTNSYIKIKRLLSTMMN 526
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 400 C*QHNFSYNCDTSFTERCFEGKKGYKLIPFLYFLQGCNVTLFYNL-YKVIHNISETFCYD 576
C N + D + C K+G + Y + C L Y+ + H E +C++
Sbjct: 250 CGSCNRIFAGDECYERHCVPNKEGNSICSKYYRCKACKKVLAYSKRHPRDHKCGEVYCFN 309
Query: 577 CK 582
CK
Sbjct: 310 CK 311
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 61 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 228
+N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
Length = 215
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 367 SAALVTLPPPASLKLTALMTPTATVCLMSRTAKR--PRGGIPGR 242
S + V PP+S + L TPT + + A++ P GG+PG+
Sbjct: 3 SLSNVAAAPPSSNPSSGLATPTINLNTLPTGARQPVPGGGVPGQ 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,622,553
Number of Sequences: 59808
Number of extensions: 364384
Number of successful extensions: 1073
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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