Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0186
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 144 6e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 144 6e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 144 6e-35
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50029-1|CAA90340.2| 460|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 4.7
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 4.7
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 4.7
U64837-9|AAB04843.2| 309|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 144 bits (348), Expect = 6e-35
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = +1
Query: 7 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 186
EA F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +K
Sbjct: 302 EARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLK 361
Query: 187 SGDAAIVNLVPSKPLCVESFQEFHP 261
SGDA IV L+P+KPLCVESF ++ P
Sbjct: 362 SGDAGIVELIPTKPLCVESFTDYAP 386
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +3
Query: 258 PLGRFAVRDMRQTVAVGVIKAV 323
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 386 PLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 144 bits (348), Expect = 6e-35
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = +1
Query: 7 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 186
EA F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +K
Sbjct: 336 EARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLK 395
Query: 187 SGDAAIVNLVPSKPLCVESFQEFHP 261
SGDA IV L+P+KPLCVESF ++ P
Sbjct: 396 SGDAGIVELIPTKPLCVESFTDYAP 420
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +3
Query: 258 PLGRFAVRDMRQTVAVGVIKAV 323
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 144 bits (348), Expect = 6e-35
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = +1
Query: 7 EAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 186
EA F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +K
Sbjct: 336 EARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLK 395
Query: 187 SGDAAIVNLVPSKPLCVESFQEFHP 261
SGDA IV L+P+KPLCVESF ++ P
Sbjct: 396 SGDAGIVELIPTKPLCVESFTDYAP 420
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +3
Query: 258 PLGRFAVRDMRQTVAVGVIKAV 323
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +1
Query: 19 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 198
F A+V+VL H I++GY+ VL +A + +D++TG+ K +K +
Sbjct: 431 FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEK 488
Query: 199 AIVNLVPSKPLCVESFQEF 255
I+ L +P +E F+E+
Sbjct: 489 CIMRLESPEPFVLEPFKEY 507
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVG-VIKAV 323
P LGRF +RD +T+A+G V+K V
Sbjct: 508 PYLGRFTLRDEGKTIAIGKVLKVV 531
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 439 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 284
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z50029-1|CAA90340.2| 460|Caenorhabditis elegans Hypothetical
protein ZC504.1 protein.
Length = 460
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 182 SSLEMQPLSTWYLPSLYV*SPSRNSTPRSFCCP*HEADSC 301
+S++ PL T P Y SP+ FCC H SC
Sbjct: 170 NSMKCNPLETSSCPKTYYCSPAVPGAHWGFCCSVHIEASC 209
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 82 LDCHTAHIACKFAEIKEKVDRRTGKSTE 165
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 82 LDCHTAHIACKFAEIKEKVDRRTGKSTE 165
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 82 LDCHTAHIACKFAEIKEKVDRRTGKSTE 165
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U64837-9|AAB04843.2| 309|Caenorhabditis elegans Hypothetical
protein T27E4.1 protein.
Length = 309
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 526 KIMLHYSLVKNIEKE*VCSPFFLR 455
+++LHYS V N++ + CS F+R
Sbjct: 186 RLILHYSTVTNLKLDESCSAIFIR 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,941
Number of Sequences: 27780
Number of extensions: 275063
Number of successful extensions: 777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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