Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0186
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 101 5e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 44 8e-05
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 38 0.007
At1g21480.2 68414.m02686 exostosin family protein contains Pfam ... 29 2.5
At1g21480.1 68414.m02685 exostosin family protein contains Pfam ... 29 2.5
At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 29 3.3
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 4.4
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 28 5.8
At4g31040.1 68417.m04408 proton extrusion protein-related contai... 27 7.7
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 7.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +1
Query: 10 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 189
AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+
Sbjct: 325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKN 384
Query: 190 GDAAIVNLVPSKPLCVESFQEFHP 261
GDA +V + P+KP+ VE+F E+ P
Sbjct: 385 GDAGMVKMTPTKPMVVETFSEYPP 408
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAVN 326
PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +1
Query: 10 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 189
AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+
Sbjct: 325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKN 384
Query: 190 GDAAIVNLVPSKPLCVESFQEFHP 261
GDA +V + P+KP+ VE+F E+ P
Sbjct: 385 GDAGMVKMTPTKPMVVETFSEYPP 408
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAVN 326
PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +1
Query: 10 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 189
AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+
Sbjct: 325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKN 384
Query: 190 GDAAIVNLVPSKPLCVESFQEFHP 261
GDA +V + P+KP+ VE+F E+ P
Sbjct: 385 GDAGMVKMTPTKPMVVETFSEYPP 408
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAVN 326
PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +1
Query: 10 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 189
AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+
Sbjct: 325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKN 384
Query: 190 GDAAIVNLVPSKPLCVESFQEFHP 261
GDA +V + P+KP+ VE+F E+ P
Sbjct: 385 GDAGMVKMTPTKPMVVETFSEYPP 408
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAVN 326
PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 407 PPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 101 bits (241), Expect = 5e-22
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = +1
Query: 40 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 219
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 220 SKPLCVESFQEFHP 261
+KP+ VE++ + P
Sbjct: 61 TKPMVVEAYSAYPP 74
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 255 PPLGRFAVRDMRQTVAVGVIKAV 323
PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 73 PPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +1
Query: 28 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIV 207
Q++ L + GY +L H C+ E+K ++D +T K + +K+G A +
Sbjct: 427 QILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVC 486
Query: 208 NLVPSKPLCVESFQEF 255
+ + +C+E F +F
Sbjct: 487 RIQVTNSICIEKFSDF 502
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +1
Query: 10 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 189
A V+VL I G H A A ++ +D +TG+ T+ +P+ + +
Sbjct: 559 ATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTA 618
Query: 190 GDAAIVNLVPSKPLCVESFQE 252
+A++ + P+CVE+F E
Sbjct: 619 KQSAMLEVSLQNPVCVETFSE 639
>At1g21480.2 68414.m02686 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 410
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 281 TDSKTTEGWNSWKDSTHRGLEGTKLTMAASPDLMDFGLT 165
TD K T +NSWKD G +T PD+ L+
Sbjct: 224 TDKKDTTAFNSWKDIIIPGNVDDAMTKNGQPDVQPLPLS 262
>At1g21480.1 68414.m02685 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 462
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 281 TDSKTTEGWNSWKDSTHRGLEGTKLTMAASPDLMDFGLT 165
TD K T +NSWKD G +T PD+ L+
Sbjct: 224 TDKKDTTAFNSWKDIIIPGNVDDAMTKNGQPDVQPLPLS 262
>At3g44350.1 68416.m04765 no apical meristem (NAM) family protein
Tobacco elicitor-responsive gene (TERN), NAC-domain
protein, Nicotiana tabacum, EMBL:AB021178
Length = 228
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 278 DSKTTEGWNSWKDSTHRGLE-GTKLTMAASPDLMDFGLTSVDLPVRRSTFS 129
D + TE + ++ G+E ++ T++ SP+ G VDLPV +T +
Sbjct: 155 DRRPTEAYAIERNLPSNGVETSSRATISTSPETSHSGGNQVDLPVNATTIT 205
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 112 KFAEIKEKVDRRTGKSTEVNPKSI 183
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 478 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 302
+C L + + +K R C+ A N + F+ F A L+TLPPP+ P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511
Query: 301 ATVCLMS 281
A +M+
Sbjct: 512 APGAMMT 518
>At4g31040.1 68417.m04408 proton extrusion protein-related contains
weak similarity to Proton extrusion protein pcxA
(Swiss-Prot:P75028) [Synechocystis sp.]
Length = 438
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 469 GYKLIPFLYFLQGCNVTLFYNLYKVIHNISET 564
G L LY QG L + YK+I+NIS+T
Sbjct: 325 GISLFVLLYANQGRVALLKFTGYKIINNISDT 356
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 27.5 bits (58), Expect = 7.7
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +1
Query: 421 YNCD---TSFTERCFEGKKGYKLIPFLYFLQGCNVTLFYNLYKVIHNI--SETFCYDCKL 585
Y CD + C GK Y L P F G LFY ++ N S FCY C+L
Sbjct: 600 YTCDYCMITLHVNCLLGKDIY-LKPCHIFKVG----LFYKEVEIARNDGNSRLFCYICRL 654
Query: 586 KC 591
+C
Sbjct: 655 RC 656
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,957,825
Number of Sequences: 28952
Number of extensions: 251143
Number of successful extensions: 732
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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