Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0184
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   3.8  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   5.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.6  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   8.7  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   8.7  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   8.7  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 375  WNYCVRCRGHC-QQYVCYSWDE**FCSRYAQH 283
            W  C RC+G   Q  +C S D   F  R A+H
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEH 1068


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 166  SCGGNILNQRSILSAAHCPYGDA 234
            +  GN+LN  +  S ++CPY  A
Sbjct: 1451 TAAGNLLNPNATTSCSYCPYQTA 1473


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 139 TWNWNQWWQSCGG 177
           T N+  WW SCGG
Sbjct: 114 TVNYPTWWDSCGG 126


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 478 RSEGLIRSNSARP----GLDHQSECLRPTLQTH*PC 573
           R   + R NS R     G +H  +CL P+ +T  PC
Sbjct: 336 RRTTISRDNSTRSTWGIGSEHDMQCLPPSYETMGPC 371


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 372 NYCVRCRGHCQQYVCYSWDE 313
           +YC+R  G+C  Y  Y WD+
Sbjct: 173 DYCLR--GYCTVYKYYKWDK 190


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 258 GSTFANSGGVVHNVNRIIIHPNYNRR 335
           GS   N GG++   N  I HP    R
Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPENRSR 200


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 492 NSEQLRTSRSGPSIRMPASNVTDPLTVLSPLTCCALVFW 608
           N+E +      P    P S++ D  + ++P+TC  L  W
Sbjct: 261 NNENIDAFTESPCGNCPVSDICDANSRVNPITCEYLDKW 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,014
Number of Sequences: 5004
Number of extensions: 59154
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)