Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0184
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    49   4e-08
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.11 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.0  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)
 Frame = +1

Query: 67  NPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRW 246
           NP RI+GG+ T IN++P +A +  T+   +    CG  I+++R +L+AAHC   + T + 
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGIKRTY---EPGMICGATIISKRYVLTAAHCIIDENTTKL 213

Query: 247 RI 252
            I
Sbjct: 214 AI 215



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
 Frame = +3

Query: 285 VVHNVNRIIIHPNYNRRTAD----SDLCILRSNSNIAYNNNVRPINIAGANY-NLGDNQV 449
           V+H++N++IIHP Y+    D    +D+ +L++  +I + + V P  +   ++ +      
Sbjct: 232 VLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSD 291

Query: 450 VWAAGWGATSLGGSNSEQLR 509
           V   GWG TS  G  S  L+
Sbjct: 292 VTVLGWGHTSFNGMLSHILQ 311


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = -1

Query: 461  SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSV--IVGMND--NSVHV 294
            ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+  I    D  N V  
Sbjct: 825  TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKT 881

Query: 293  MHNTPTVGKGGTNRIRQRPVA 231
               T T  K  TN I  +PVA
Sbjct: 882  QITTNTPAKKATN-IGGKPVA 901


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +3

Query: 384 YNNNVRPINIAGANYNLGDNQVVWAAGWGATSL-----GGSNSEQLRTSRSGPSIRMPAS 548
           Y    R   I   +  LG  QV+ A+G    +L     GG+N++     R+  S      
Sbjct: 226 YYKIYRAAVIQTKSLKLGTKQVLMASGELELTLRIHRGGGTNTDARHLFRTASSTPEDLQ 285

Query: 549 NVTDPLTVLSPLTC 590
           ++ +PLT +    C
Sbjct: 286 DLEEPLTTIQHNNC 299


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 464 TSSPNNLVITKIVIGTSNINRTNVVVISY 378
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 103  INQYPGIAALLYTWNWNQWWQ 165
            +  Y   AA + TWN  ++W+
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWE 1198


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 57  SRHSSKPKGQQNN 19
           +RHSSK   Q NN
Sbjct: 432 ARHSSKSDNQNNN 444


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 366 SNSNIAYNNNVRPINIAGANYN 431
           SN  I  NNN    N    NYN
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 285 VVHNVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNNVRPI 407
           ++ +++   IH N N +   ++     +N N  YNNN + +
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,662
Number of Sequences: 438
Number of extensions: 4566
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)