Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0183
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5KHV0 Cluster: Putative uncharacterized protein; n=1; ...    35   1.3  
UniRef50_A1WJG8 Cluster: Inner-membrane translocator; n=3; Burkh...    34   3.0  
UniRef50_A0BK22 Cluster: Chromosome undetermined scaffold_111, w...    34   3.0  
UniRef50_Q9MJ73 Cluster: Physarum polycephalum mitochondrial DNA...    33   7.0  
UniRef50_Q23DH2 Cluster: PX domain containing protein; n=1; Tetr...    32   9.3  

>UniRef50_Q5KHV0 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 211

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -1

Query: 405 SFSMLPTRRPVSGV---PPPTTASFSITRQHHFNYYHS 301
           S+S LP+  PVS     PPP T+S S+++ HHF  + S
Sbjct: 25  SYSPLPSSPPVSPFNQHPPPRTSSLSLSQSHHFRPHDS 62


>UniRef50_A1WJG8 Cluster: Inner-membrane translocator; n=3;
           Burkholderiales|Rep: Inner-membrane translocator -
           Verminephrobacter eiseniae (strain EF01-2)
          Length = 332

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = +2

Query: 347 AVVGGGTPETGRRVGNILNEMTNIIALMLILSTINY 454
           AVV GGT  TG   G+ILN +T ++ L +IL+ IN+
Sbjct: 255 AVVVGGTLLTGGE-GSILNTLTGVLLLAVILNMINF 289


>UniRef50_A0BK22 Cluster: Chromosome undetermined scaffold_111,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_111,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 483

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = -2

Query: 407 FHSVCYRLDDQFQASHR-LRLHHSQSRDSITLIIIIVHAAFN---TSNWI---EITKIYS 249
           +  + Y  DD F  +H+ +R   SQ  D++TL+   +    N   T N     EITK  S
Sbjct: 149 YQYITYCPDDHFAQTHQDIRFQGSQRMDNLTLLGAYIQKCTNSTETQNCAPEEEITKSLS 208

Query: 248 TNFIYYTYDFNNIINQFNLH 189
              ++Y+Y F     + +L+
Sbjct: 209 NANLFYSYSFYQFNKELDLY 228


>UniRef50_Q9MJ73 Cluster: Physarum polycephalum mitochondrial DNA,
           complete genome; n=2; Physarum polycephalum|Rep:
           Physarum polycephalum mitochondrial DNA, complete genome
           - Physarum polycephalum (Slime mold)
          Length = 543

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 199 LIYICKFLKPIFYILNAVKAENSYFVFLFQTRNETRSKT-TFLLYIYNL 56
           ++YI  ++K IFYIL A   E   F+ L    N    KT  ++L IY L
Sbjct: 195 ILYIYAYIKNIFYILRAFFPEILLFISLISDLNNREIKTFYYILAIYPL 243


>UniRef50_Q23DH2 Cluster: PX domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: PX domain containing
           protein - Tetrahymena thermophila SB210
          Length = 940

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 27/94 (28%), Positives = 44/94 (46%)
 Frame = -2

Query: 374 FQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYYTYDFNNIINQFN 195
           +Q +H L+L  S    +++L  +I+  A   +N   +  I  T  I   Y+F      F 
Sbjct: 51  YQLTHVLKLVGSCIFGALSLARLILEIAMGNNNSSILVVI--TYLIRQEYNFLGYSTPF- 107

Query: 194 LHL*ILKTYILYIECCESRELIFCFSFPNTK*DT 93
                L+T++L+ E C +  LI    FPN + DT
Sbjct: 108 -----LRTFLLFFESCYALMLILSEIFPNYENDT 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,089,138
Number of Sequences: 1657284
Number of extensions: 10279974
Number of successful extensions: 26818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26804
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)