Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0183
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   2.1  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   8.7  

>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = -2

Query: 356 LRLHHSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYYTY 225
           ++ H ++S + +++I  ++ +  NTS    I    +++++ YTY
Sbjct: 198 IKNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPASDYLNYTY 241


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 405 SFSMLPT---RRPVSGVPPPTTASFSITRQ 325
           S S+LPT   +RP S VP P TA+   T+Q
Sbjct: 381 STSVLPTSILQRPPSIVPRPETAAIQHTQQ 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,670
Number of Sequences: 5004
Number of extensions: 48586
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)