Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0183
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0550 - 23795957-23796154,23796596-23796650,23797324-237973...    28   6.7  
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764...    27   8.8  

>02_04_0550 -
           23795957-23796154,23796596-23796650,23797324-23797376,
           23797453-23797529,23797613-23797736,23797848-23797964,
           23798439-23798547,23798724-23798829,23799043-23799106,
           23799214-23799333
          Length = 340

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 401 SVCYRLDDQFQASHRLR--LHHSQSRDSITLIIIIVH 297
           SVC+RLDD  Q S+  R  L+   +R+ +T I   +H
Sbjct: 93  SVCFRLDDDLQRSNEWRESLNPCANRNCLTNICANLH 129


>05_05_0208 +
           23275931-23275996,23276084-23276196,23276279-23276459,
           23276590-23276674,23276974-23277104,23277194-23277432,
           23277512-23277748,23277838-23277992,23278039-23278271,
           23278359-23278521,23278613-23278818,23278960-23279019,
           23279106-23279198,23279406-23279569,23280070-23280138,
           23280241-23280382,23280490-23280546
          Length = 797

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 398 VCYRLDDQFQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYYTYD 222
           VC    D+     R+ +H    + ++T+    +HA+ N       + I + N IY TYD
Sbjct: 428 VCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA----RCSVIAAANPIYGTYD 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,987
Number of Sequences: 37544
Number of extensions: 245919
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)