Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0183
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)                   29   2.9  
SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)              28   6.8  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       28   6.8  

>SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)
          Length = 376

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/77 (20%), Positives = 34/77 (44%)
 Frame = -2

Query: 344 HSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYYTYDFNNIINQFNLHL*ILKTYI 165
           +  +R +ITL ++ + +      ++ +  IY    I +TY   N++   +    ++ T I
Sbjct: 240 YRDNRLAITLFLVTIASLLAWVPFVVLNGIYYYTDIKFTYTVQNVVKLLHYMNSLINTVI 299

Query: 164 LYIECCESRELIFCFSF 114
                 E +  +F F F
Sbjct: 300 YASRMAEFKRALFHFMF 316


>SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)
          Length = 190

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 380 RRVGNILNEMTNIIALMLILSTINYILL*LFLKKTSEHF 496
           R++  I+  M NI+ +++I+ TIN I++ + +     HF
Sbjct: 53  RKMVIIMTVMPNIMMIIIIIITINLIIIIIIITHYYHHF 91


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 84   PHSYFIFTISDDAHVSNARSLHPRYSGT 1
            P+ + ++ I DD H+   +S  P Y+GT
Sbjct: 3896 PNEHIVYHIRDDVHILIIKSPTPLYAGT 3923


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,118,002
Number of Sequences: 59808
Number of extensions: 317052
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)