Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0183
         (609 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    26   1.1  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   1.4  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.4  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   5.8  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   5.8  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   5.8  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   7.7  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   7.7  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 401 SVCYRLDDQFQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNW 273
           S   R+ D   A+   R  +++ +  + ++ + +  AFNT+NW
Sbjct: 613 SAIQRVVDAGTAAKLFRRTNTRDKRCLMVVALDIRNAFNTANW 655


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 365 SHRLRLHHSQSRDSITLIIII--VHAAFNTSNW 273
           SH +    + +RD   L+++   V  AFNT++W
Sbjct: 554 SHAMSFGRTNNRDKRCLLVVALDVRNAFNTASW 586


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 399 SMLPTRRPVSGVPPPTTASFSITRQHHFNYYHSP 298
           S L  +RPV+   PP  +S +  +Q      H P
Sbjct: 64  SKLAQKRPVTSPAPPVLSSSAQQQQQQQQLLHHP 97


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 356 LRLHHSQSRDSITLIIII--VHAAFNTSNWIEI 264
           +    +  RD+  L+++   V  AFNT+NW  I
Sbjct: 611 MSFRRTNGRDNRFLLVVALDVKNAFNTANWQSI 643


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 356 LRLHHSQSRDSITLIIII--VHAAFNTSNWIEITK 258
           L L  + +RD   L+++   V  AFNT++W  I +
Sbjct: 560 LSLGRTNNRDRRCLMVVALDVRNAFNTASWQSIAE 594


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 401 SVCYRLDDQFQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNWIEI 264
           S    L D  +AS      +++ +  + ++ + V  AFNT++W  I
Sbjct: 557 SAIQSLVDAGKASRSFGQTNNRDKRCLMVVALDVRNAFNTASWQSI 602


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 356 LRLHHSQSRDSITLIIII--VHAAFNTSNW 273
           +R   +  RD+  L+++   V  AFNT++W
Sbjct: 618 MRFRRTNGRDNRFLLVVSMDVKNAFNTASW 647


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 245 NFIYYTYDFNNIINQF 198
           N  YY +DF++ +N F
Sbjct: 950 NHFYYLFDFDSSLNSF 965


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,467
Number of Sequences: 2352
Number of extensions: 11012
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)