BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0183 (609 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 30 1.0 At5g44270.1 68418.m05418 hypothetical protein 27 7.4 At5g46280.1 68418.m05697 DNA replication licensing factor, putat... 27 9.7 At2g07880.1 68415.m01007 hypothetical protein 27 9.7 >At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (PTPA) family protein similar to Protein phosphatase 2A, regulatory subunit B' (PP2A, subunit B', PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA) (Swiss-Prot:Q28717) [Oryctolagus cuniculus] Length = 392 Score = 30.3 bits (65), Expect = 1.0 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Frame = -2 Query: 410 SFHSVCYRLDDQFQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYY 231 SF S RL ++ + S L + ++S+ I+ +F S+ I+ + TNF + Sbjct: 177 SFRSWHERLRERGE-SLILEFLPEEFKESVIEIVPYFFDSFGNSSRIDYGTGHETNFAAW 235 Query: 230 TYDFNN--IINQFNLHL*ILKTYILYIECCESRELIFC 123 Y I+ + + H + + ++ Y+E ++++C Sbjct: 236 LYCLARMGIVKEEDYHSLVARVFVKYLELMRKLQMVYC 273 >At5g44270.1 68418.m05418 hypothetical protein Length = 309 Score = 27.5 bits (58), Expect = 7.4 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 562 QKYILHSSHRPVLNPDIDTHKIK 494 Q++ LH HRP+ D D HKIK Sbjct: 206 QEFNLHVDHRPIERADFD-HKIK 227 >At5g46280.1 68418.m05697 DNA replication licensing factor, putative similar to SP|Q43704 DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) {Zea mays}; contains Pfam profile PF00493: MCM2/3/5 family Length = 776 Score = 27.1 bits (57), Expect = 9.7 Identities = 15/59 (25%), Positives = 27/59 (45%) Frame = -2 Query: 398 VCYRLDDQFQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYYTYD 222 VC D+ R+ +H + ++T+ +HA+ N + + + N IY TYD Sbjct: 396 VCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA----RCSVVAAANPIYGTYD 450 >At2g07880.1 68415.m01007 hypothetical protein Length = 173 Score = 27.1 bits (57), Expect = 9.7 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -2 Query: 350 LHHSQSRDSITLIIIIVHAAFNTSNWIE 267 L+HS +R SIT II+H+ +T+N +E Sbjct: 8 LNHSTNRSSIT---IIIHSTNHTTNMVE 32 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,904,810 Number of Sequences: 28952 Number of extensions: 223602 Number of successful extensions: 555 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 554 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1216725696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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