Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0183
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P...    30   1.0  
At5g44270.1 68418.m05418 hypothetical protein                          27   7.4  
At5g46280.1 68418.m05697 DNA replication licensing factor, putat...    27   9.7  
At2g07880.1 68415.m01007 hypothetical protein                          27   9.7  

>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
           (PTPA) family protein similar to Protein phosphatase 2A,
           regulatory subunit B' (PP2A, subunit B', PR53 isoform)
           (Phosphotyrosyl phosphatase activator) (PTPA)
           (Swiss-Prot:Q28717) [Oryctolagus cuniculus]
          Length = 392

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = -2

Query: 410 SFHSVCYRLDDQFQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYY 231
           SF S   RL ++ + S  L     + ++S+  I+     +F  S+ I+    + TNF  +
Sbjct: 177 SFRSWHERLRERGE-SLILEFLPEEFKESVIEIVPYFFDSFGNSSRIDYGTGHETNFAAW 235

Query: 230 TYDFNN--IINQFNLHL*ILKTYILYIECCESRELIFC 123
            Y      I+ + + H  + + ++ Y+E     ++++C
Sbjct: 236 LYCLARMGIVKEEDYHSLVARVFVKYLELMRKLQMVYC 273


>At5g44270.1 68418.m05418 hypothetical protein
          Length = 309

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 562 QKYILHSSHRPVLNPDIDTHKIK 494
           Q++ LH  HRP+   D D HKIK
Sbjct: 206 QEFNLHVDHRPIERADFD-HKIK 227


>At5g46280.1 68418.m05697 DNA replication licensing factor, putative
           similar to SP|Q43704 DNA replication licensing factor
           MCM3 homolog (Replication origin activator) (ROA
           protein) {Zea mays}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 776

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 398 VCYRLDDQFQASHRLRLHHSQSRDSITLIIIIVHAAFNTSNWIEITKIYSTNFIYYTYD 222
           VC    D+     R+ +H    + ++T+    +HA+ N       + + + N IY TYD
Sbjct: 396 VCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNA----RCSVVAAANPIYGTYD 450


>At2g07880.1 68415.m01007 hypothetical protein
          Length = 173

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 350 LHHSQSRDSITLIIIIVHAAFNTSNWIE 267
           L+HS +R SIT   II+H+  +T+N +E
Sbjct: 8   LNHSTNRSSIT---IIIHSTNHTTNMVE 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,904,810
Number of Sequences: 28952
Number of extensions: 223602
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)