Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0180
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    29   0.59 
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    29   0.59 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   3.1  
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    25   5.5  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   5.5  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   9.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.5  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = +2

Query: 11  FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 190
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S   W  ++ R     A
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133

Query: 191 QYVEVIHTDGSGVNK 235
            + ++I  D + + K
Sbjct: 134 YFRKMIQIDEANITK 148


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 355 LLQQKLHKRGCG--YISYSCSPVGQDGR*QRSQCVHS-NAQAVFVDTR 221
           LL  + H R  G   +S+ CSP+ +      S C++S N+++  +D R
Sbjct: 671 LLHSRFHSRVLGGVTVSFQCSPIYRVNYGLSSDCIYSINSESSLIDQR 718


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 189 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 100
           + F      +FS    EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 232 QKRLGRCYGHIDFFVNGRLVQPGCTNNLCSHNRAY 336
           QK +    G  + F + +  +  C N  C +NRAY
Sbjct: 46  QKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAY 80


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 532 KFCRHHKWMGTSCRYLLGTFQTHALQVWQYPFQL*ILGNYLRLSPL 395
           K C HH  + T C+  + T  TH  +V  + F L  + +   L+P+
Sbjct: 175 KNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPM 220


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 118 KNYGSRPFGS*LGKQRTTTGNKR 186
           +NY   PF    G+QRT+ GN R
Sbjct: 52  ENYPQLPFVLATGRQRTSVGNIR 74


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 400 EITANNCRGFIVEMGTAKLVKHGSG 474
           E+T+ NC G ++      L K GSG
Sbjct: 689 EVTSVNCTGIVLSFCCDNLAKIGSG 713


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 480 EHSRPMLYKFGSTHFNYKSSAIICGYLRFCAALISV 373
           E   P+ +++ S H   +     C  LR+  +LISV
Sbjct: 216 ETLEPLKHRYKSQHHRLRQFYADCSNLRYLTSLISV 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,563
Number of Sequences: 5004
Number of extensions: 46635
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)