Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0180
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1191 + 24690936-24691029,24691184-24691377                       31   0.59 
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342...    30   1.4  
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    29   2.4  
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052     27   9.7  
01_01_0363 + 2850954-2853675,2853819-2854225                           27   9.7  

>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 250 CYGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEAEITANN 417
           CY H++     +  + GCT   C      +       + +HY  QC    E+ AN+
Sbjct: 29  CYAHVEAKTVCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCCCTYELQAND 84


>03_03_0196 +
           15331604-15331646,15332141-15332260,15334106-15334221,
           15334661-15334749,15334885-15334927,15335567-15335741,
           15335840-15335971,15336046-15336383,15336791-15337129,
           15337293-15337975,15338228-15338807,15339356-15339679,
           15340149-15340262
          Length = 1031

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 182 NDAQYVEVIHTDGSGVNKNGLGVAMDTLTSL 274
           +DAQY+E  H+  +G+N+  L + ++ L +L
Sbjct: 538 SDAQYMETSHSQANGINEMHLQIRLEKLLTL 568


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 2   IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 121
           IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 416 IAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
          Length = 495

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 197 RIEHRLFPVVVRCFPNHE 144
           R E +L PV +RCFPN E
Sbjct: 351 RNEAKLLPVFLRCFPNVE 368


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 212 CE*LQRIEHRLFPVVVRCFPNHEPKG 135
           CE L+R+ HR    ++ C  + +P+G
Sbjct: 767 CEALRRVRHRCLTKIITCCSSIDPQG 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,446
Number of Sequences: 37544
Number of extensions: 316723
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)