Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0180
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 58 6e-09
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 52 2e-07
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 47 9e-06
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07) 36 0.021
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043) 29 3.2
SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18) 27 9.9
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 57.6 bits (133), Expect = 6e-09
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
Frame = +2
Query: 44 VHIVGFNLGAHVAGVTGRNLEGK---VARITGLDPSARDW---ENNVLRLGTNDAQYVEV 205
VH++GF+ GAHVAG GR ++ + + RIT LDP+A W + +RL T+DA +V+V
Sbjct: 191 VHVIGFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAM-WFHKHHEDVRLDTSDALFVDV 249
Query: 206 IHT 214
IHT
Sbjct: 250 IHT 252
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Frame = +1
Query: 256 GHIDFFVNGRLVQPGCTN--------NLCSHNRAYEVFAATI-THGKHYGNQCSTEAEIT 408
GH DF+ NG QPGC N C H RA +F ++ T Y C +E +
Sbjct: 263 GHADFYPNGGKKQPGCDNFFRGFSSYLFCGHKRAPALFTTSLYTKTPLYSYPCRSEDDFN 322
Query: 409 ANNC 420
+ NC
Sbjct: 323 SGNC 326
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/62 (46%), Positives = 45/62 (72%), Gaps = 5/62 (8%)
Frame = +2
Query: 47 HIVGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDAQYVEVIH 211
++VGF+LGAH++G GR + K+ RITGLDP++ + N +V +RL +DA +V+V+H
Sbjct: 690 YLVGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMH 749
Query: 212 TD 217
TD
Sbjct: 750 TD 751
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Frame = +1
Query: 256 GHIDFFVNGRLVQPGCTNNL--------CSHNRAYEVFAATIT 360
GHIDF+ NG QPGC + L C H RA E +A ++T
Sbjct: 762 GHIDFYPNGGKKQPGCRDLLDGPINYVICDHMRAPEYYAESVT 804
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 5/61 (8%)
Frame = +2
Query: 47 HIVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSARDWENNV--LRLGTNDAQYVEVIH 211
H +GF+LGAH++G G+ L+ G+ + RITGLDP+ ++ +RL DAQ+V+VIH
Sbjct: 174 HSIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQFVDVIH 233
Query: 212 T 214
T
Sbjct: 234 T 234
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +2
Query: 2 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 127
I T + L +VH++G +LGAHVAG G L GKV RIT
Sbjct: 89 ITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130
>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
Length = 408
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Frame = +1
Query: 256 GHIDFFVNGRLVQPGC-------TNNL-CSHNRAYEVFAATIT 360
GHIDF+ NG QPGC +N L C H RA++ F +IT
Sbjct: 43 GHIDFYPNGGKNQPGCRDIADGPSNALKCDHVRAHDYFTESIT 85
>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Frame = +2
Query: 50 IVGFNLGAHVAGVTG---RNLEG-KVARITG 130
++GF+LG HVAG G +N G K+ RI+G
Sbjct: 21 VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51
>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 2 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 142
+ +FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 265 DFFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEA 399
D++ ++ G T+ C YE T GK YGN+C A
Sbjct: 1278 DYYAQCQVEDDGSTSCKCPIFCTYEYMPVCGTDGKTYGNKCEMRA 1322
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 259 HID-FFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEAEITANN-CRG 426
HID +NG +V PG + Y AT+T G Y EAE T CRG
Sbjct: 33 HIDQSSINGSVVPPGALVTILQKGVQYVEAEATVTEGVQY-----VEAEATVTEVCRG 85
>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Frame = +2
Query: 227 VNKNGLGVAMDT----LTSLSTAVLSNRAARITYVATTALMKFLLQQLRM----ANITEI 382
V+ NG+ + T LTSL A++ + +VA A+ +L++LRM AN+ EI
Sbjct: 171 VSYNGVQICRMTHVSLLTSLQYAIIQTVLTVLLFVAMLAINVMILKKLRMSRFAANLPEI 230
Query: 383 SAAQKRR 403
++ R
Sbjct: 231 QRKKRER 237
>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
Length = 183
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 11 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 142
FL + + K H+ G ++G H+ GV +VA + + P+
Sbjct: 1 FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44
>SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 259 HIDFFVNGRLVQPGCTNNLCSHNRA 333
H+D VNG VQ C+HN+A
Sbjct: 24 HLDKDVNGAYVQGSFIGGFCTHNKA 48
>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
Length = 530
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 534 LSFVGITNGWVPHAGIYSEHSRPMLYK-FGSTHFNYKSSAIICGYL 400
L+ +G TNGW+ S S P+ Y F S + +I YL
Sbjct: 322 LALIGPTNGWINGHKRLSVTSLPIFYNFFASIRVPINTRKVISSYL 367
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,423,117
Number of Sequences: 59808
Number of extensions: 373260
Number of successful extensions: 818
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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