Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0180
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical
           protein Y48G1C.4 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 507 WVPHA-GIYSEHSRPMLYKFGSTHFNYKS 424
           W  HA G+++EH+  ++   GS+++ Y+S
Sbjct: 355 WTFHAKGLWAEHNNQLMTLIGSSNYGYRS 383


>Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical
           protein ZC373.6 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 125 TGLDPSARDWENNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAMDTLTSL 274
           TG +P AR  E     +   +    E +   GSG    G G  + T+T +
Sbjct: 43  TGKEPHARKIEQETEEIKKEELMQAEDVEGSGSGEEIEGSGEVISTITGV 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,855,653
Number of Sequences: 27780
Number of extensions: 273642
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)