Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0180
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.66 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 149 DWENNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAMDTLTSLSTAVLSNRAAR 307
           DW  N+ + G N  + +E+IH    G+ K  + +  +   S    ++ N A +
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH----GLTKKVIQLKKEEYKSGKRNIIDNSAQK 280


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 185 DAQYVEVIHTDGSGVNKNGLGVAMDTLTSLSTAVLSN 295
           DA  VE++   G+G+N    G  +D     S  ++S+
Sbjct: 304 DAYTVEIVLEPGTGINVTLKGYCIDMEVPYSGTLISH 340


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 346 AATITHGKHYGNQCSTEAEITANN 417
           A+   + K+Y   CSTE  +T  N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 493 RYLLGTFQTHALQVWQYPFQL*ILGNYLRLSP 398
           R++    + HA  ++QY F + I     R+SP
Sbjct: 350 RHVQAEAEKHAAMLYQYNFNIIISEPTERISP 381


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 206 IHTDGSGVNKNGLGVAMDTLTSLSTAVLSNRAARITYVATTALMKFLL 349
           IH + +  ++ GLG+   T+ +LST  L +R         TAL  FLL
Sbjct: 268 IHREATS-DRVGLGIT--TVLTLSTISLDSRTDLPKVRYATALDWFLL 312


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 277 NGRLVQPGCTNNLCSH 324
           NG ++ P   +N+CS+
Sbjct: 361 NGNILSPSIHDNICSN 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,164
Number of Sequences: 438
Number of extensions: 3629
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)