Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0180
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 30 1.1
At3g49200.1 68416.m05377 hypothetical protein 29 1.5
At1g14920.1 68414.m01783 gibberellin response modulator (GAI) (R... 29 2.0
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 29 2.7
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 29 2.7
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 29 2.7
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 4.6
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 4.6
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 4.6
At1g34355.1 68414.m04265 forkhead-associated domain-containing p... 28 4.6
At3g49190.1 68416.m05376 condensation domain-containing protein ... 27 6.1
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 6.1
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 6.1
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 2 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITG 130
IA +LKN KL +N + + L +A + + GK+ + G
Sbjct: 422 IAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEVG 464
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 101 LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVAMDTL 265
LE V+ +T LD S WE ++L L T+DA+ V V+ H+ G G++ L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLACTRK 179
Query: 266 TS 271
TS
Sbjct: 180 TS 181
>At1g14920.1 68414.m01783 gibberellin response modulator (GAI)
(RGA2) / gibberellin-responsive modulator identical to
GAI GB:CAA75492 GI:2569938 [Arabidopsis thaliana] (Genes
Dev. In press)
Length = 533
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +2
Query: 113 VARITGLDPSARDWENNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAMDTLTSLSTAVLS 292
V R+TG+ P A D + + +G A E IH V G +TL L ++L
Sbjct: 300 VFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIH-----VEFEYRGFVANTLADLDASMLE 354
Query: 293 NRAARITYVATTALMK 340
R + I VA ++ +
Sbjct: 355 LRPSEIESVAVNSVFE 370
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 28.7 bits (61), Expect = 2.7
Identities = 25/99 (25%), Positives = 42/99 (42%)
Frame = +2
Query: 119 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAMDTLTSLSTAVLSNR 298
R+TG+ P A D +++ +G AQ E IH V G ++L L ++L R
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIH-----VEFEYRGFVANSLADLDASMLELR 408
Query: 299 AARITYVATTALMKFLLQQLRMANITEISAAQKRR*PQI 415
+ VA ++ + R I ++ K+ P I
Sbjct: 409 PSDTEAVAVNSVFELHKLLGRPGGIEKVLGVVKQIKPVI 447
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 2 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 121
IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 422 IAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 2 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 121
IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 422 IAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 292 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 402
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 292 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 402
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 292 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 402
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g34355.1 68414.m04265 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1477
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = +1
Query: 205 YSHRRIWCQQKRLGRCYGHIDFFV-----NGRLVQPGCTNNLCSHNRAYEVFAATITHGK 369
+S R +W + GR + H+D V N R + T N A + + H
Sbjct: 1412 FSERFMWTESTARGRTWSHLDNDVLRERYNDRACRRKSTYNRGESGAAAKGLKLILLHNS 1471
Query: 370 HYGN 381
HYG+
Sbjct: 1472 HYGH 1475
>At3g49190.1 68416.m05376 condensation domain-containing protein
contains Pfam profile PF00668: Condensation domain
Length = 522
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 131 LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVAMDTLTS 271
LD S WE ++L L T+DA+ V V+ H+ G G++ L +A TS
Sbjct: 120 LDTSRPLWELHLLDLKTSDAENVAVLKIHHSVGDGMSIMSLVLACMRKTS 169
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 234 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 76
L + P+ T+++ VP ST S S+ + + P +LPS PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 340 VFAATITHGKHYGNQCSTEAEI 405
+F TI YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,142
Number of Sequences: 28952
Number of extensions: 250176
Number of successful extensions: 657
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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