Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0179
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.73 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    26   5.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.0  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   9.0  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 199 YFVGFQN-SEVMINRDNWGHSYCDVRGEIL 113
           Y VG+ N + ++++   WGHS+ +V  E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 122 TSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFTRFEHSNLFKVKL 292
           T    +++   +P   + G+      +P    I  C KY S+ ++   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 556 LIPITRPRKSPVSLFFVTTSPCREWVICA 642
           +IPI +  KS +SL F+T SPC  + IC+
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICS 70


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 154 NWGHSYCDVRGEILGSSQDEHQXKHLPKVFSSIKNE 47
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 294 RPTSLTEEHRDRILI-LNRRFLERRLTDDMLRKRVSITADAC 416
           RP S  + HRDR+ +   R  +++ + +  LR  +   + AC
Sbjct: 9   RPQSSEKNHRDRVFVRATRGKVQKVVREQYLRNDIPCQSRAC 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,338
Number of Sequences: 5004
Number of extensions: 59745
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)