Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0179
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0005 - 16886553-16886946,16887079-16887404                       29   4.1  
02_05_0719 + 31209519-31209630,31209807-31209985,31210626-312107...    28   7.1  

>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/68 (29%), Positives = 23/68 (33%)
 Frame = +2

Query: 302 LTHRRAPR*DFDIEPAFFRTPAHRRYAPQTCQYHRGCVHRQRGAQMQLRAFNRNNFSIRY 481
           L + R P    D     F      R A     Y   C     G   Q  +  R+N S RY
Sbjct: 41  LINSRVPH-PSDASDCIFSDGKWVRDAAAVTAYREDCPFLDPG--FQCISNGRSNSSFRY 97

Query: 482 WSWNYRGC 505
           W W   GC
Sbjct: 98  WRWQPHGC 105


>02_05_0719 +
           31209519-31209630,31209807-31209985,31210626-31210790,
           31210970-31211068
          Length = 184

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 689 ISPIVSSSSTALFVPGAQITHSRHGEVVTKNNDTGLLRGLVIG 561
           ++ ++S + T LF     +T +  G +  + +D+G+LRG  +G
Sbjct: 23  LAGVISGALTGLFALAGALTGAVTGALAGRASDSGVLRGAGLG 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,635,964
Number of Sequences: 37544
Number of extensions: 397750
Number of successful extensions: 936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)