Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0179
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_24182| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 29 5.4
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 29 5.4
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = -2
Query: 116 SWIVARRTSXKAFAKGVFINQERKLEVRRRLDTALVLT 3
SWI RRT+ KAFAK VFINQERKLE RRR DT LVLT
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 101 RRTSXKAFAKGVFINQERKLEVRRRLDTALVLT 3
RRT+ KAFAK VFINQERKLE RRR DT LVLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 101 RRTSXKAFAKGVFINQERKLEVRRRLDTALVLT 3
RRT+ KAFAK VFINQERKLE RRR DT LVLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 101 RRTSXKAFAKGVFINQERKLEVRRRLDTALVLT 3
RRT+ KAFAK VFINQERKLE RRR DT LVLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 101 RRTSXKAFAKGVFINQERKLEVRRRLDTALVLT 3
RRT+ KAFAK VFINQERKLE RRR DT LVLT
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 43
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -2
Query: 98 RTSXKAFAKGVFINQERKLEVRRRLDTALVLT 3
RT+ KAFAK VFINQERKLE RRR DT LVLT
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 60
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -2
Query: 98 RTSXKAFAKGVFINQERKLEVRRRLDT 18
RT+ KAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/34 (67%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Frame = -2
Query: 101 RRTSX-KAFAKGVFINQERKLEVRRRLDTALVLT 3
R+T+ ++ AK VFINQERKLE RRR DT LVLT
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLT 41
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 123 VKFLDRRKTNIXESICQRCFHQSRTKV 43
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Frame = -2
Query: 101 RRTSX-KAFAKGVFINQERKLEVRRRLDTALVLT 3
R+T+ ++ + VFINQERKLE RRR DT LVLT
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLT 41
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 123 VKFLDRRKTNIXESICQRCFHQSRTKV 43
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_24182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 660 SRGRRYDGRNLISEWLTEKDSRGVTHEYVWNRQQ 761
S G RYDGRNL+ EW TEK +Y+WN++Q
Sbjct: 39 STGERYDGRNLVQEW-TEKQP---DSKYIWNKKQ 68
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 123 VKFLDRRKTNIXESICQRCFHQSRTKV 43
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -2
Query: 101 RRTSX-KAFAKGVFINQERKLEVRRRLDTALVLT 3
R+T+ ++ + FINQERKLE RRR DT LVLT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 123 VKFLDRRKTNIXESICQRCFHQSRTKV 43
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -2
Query: 101 RRTSX-KAFAKGVFINQERKLEVRRRLDTALVLT 3
R+T+ ++ + FINQERKLE RRR DT LVLT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -2
Query: 101 RRTSX-KAFAKGVFINQERKLEVRRRLDTALVLT 3
R+T+ ++ + FINQERKLE RRR DT LVLT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 120 KFLDRRKTNIXESICQRCFHQSRTKV 43
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 185 KTNKIEPRSYSIIPCTKYSSSIFTRFEHSNLFKVKLSAHLTHRRAPR 325
K + ++ Y+ + +S F RFEH+N ++KL+ ++ + R
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSR 771
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 705 ATLRSDFAHRIFFLYCPLRPRRANYPLPARGGSDE 601
ATL S R F Y P R R A Y A+GGS++
Sbjct: 486 ATLASADVRRCFCRYAPPRWRVAEYLTGAQGGSEQ 520
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 519 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 644
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 184 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQXKHLP 74
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 603 RHYLPVPGVGNLRAWDEEGSRGRRYDGR 686
R LP PGV WD++G G+ + G+
Sbjct: 346 RGLLPTPGVPGQMVWDQQGLPGQPHPGQ 373
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 470 SIRYWSWNYRGCWTRLALQLFLVKIFKVYS 559
S+R W + +R C + LA QLF V + + S
Sbjct: 1135 SLRLWGYKWRKCDSTLAKQLFSVLVQAILS 1164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,837,513
Number of Sequences: 59808
Number of extensions: 475494
Number of successful extensions: 955
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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