Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0179
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-3|AAB37932.1|  332|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light ...    28   6.3  
AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U80840-3|AAB37932.1|  332|Caenorhabditis elegans Hypothetical
           protein F08D12.8 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 404 RGCVHRQRGAQMQLRAFNRNNFSIRYWSWNYRGCWTRLALQLFL 535
           +G  H    A++++ A N N++ +    + Y+ C  RLA+Q +L
Sbjct: 277 KGISHSVYSAELKIVARNENDYQLGDTIYVYQNCGRRLAMQTYL 320


>U55369-11|AAT68902.1|  531|Caenorhabditis elegans Kinesin light
           chain protein 2,isoform d protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 513 DLPSNCSSLKYLKCTH---SDYEAS*ESRIVIFRHYLPVPGVGNLRAWDEEGSRGRRYDG 683
           D P+  ++LK L   +     YEA+     V  R    +  +GN      E ++G+R D 
Sbjct: 451 DSPTVTTTLKNLGALYRRQGKYEAAETLEDVALRAKKQIISLGNRSPTMGESTQGQRKDK 510

Query: 684 RNLISEW 704
            N++ EW
Sbjct: 511 NNILMEW 517


>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 713 LSEPL*DQISPIVSSSSTALFVPGAQIT 630
           +SEPL D++S + SSS++     G  IT
Sbjct: 60  MSEPLSDKVSAVASSSTSVFAAHGTNIT 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,484
Number of Sequences: 27780
Number of extensions: 345950
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)