Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0179
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26700.1 68414.m03252 seven transmembrane MLO family protein ...    29   2.6  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    28   5.9  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   7.8  
At1g54430.1 68414.m06209 hypothetical protein                          28   7.8  

>At1g26700.1 68414.m03252 seven transmembrane MLO family protein /
           MLO-like protein 14 (MLO14) identical to membrane
           protein Mlo14 [Arabidopsis thaliana]
           gi|14091598|gb|AAK53807; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 554

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 291 CRPTSLTEEHRDRILILNRRFLERRLTDDMLRKRVS-ITADACTDSAAHKCNYE 449
           C P+ + EE    I  + R  L R L    LR+R+S I  D C++      +YE
Sbjct: 98  CTPSEINEELESTISTVKRTQLTRSLFLHTLRRRLSGIGEDTCSEGHEPFLSYE 151


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 309 TEEHRDRILILNRRFLERRLT--DDMLRKRVSITADACTDSAAHKCNYELLT 458
           +E H D    ++RR+LE +    DD++  R  +   +  DS+  K    LL+
Sbjct: 38  SESHSDADSAIHRRYLEEKFAEEDDLIAARRGLRLQSMDDSSVFKRRSSLLS 89


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 513 DLPSNCSSLKYLKCTHSDYE 572
           DL +NCSSL+YL  +H+  E
Sbjct: 167 DLFNNCSSLRYLSLSHNHLE 186


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 689  ISPIVSSSSTALFVPGAQITHSRHGEVVTKNNDT 588
            + P+ SS+  AL +PG +  HSR    +  + D+
Sbjct: 1202 VMPVASSAIAALLLPGGRTAHSRFKIPINVHEDS 1235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,141
Number of Sequences: 28952
Number of extensions: 316360
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)