Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0177
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.0  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    22   5.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.3  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 345 SGDNRGRASLVDVQNDLHERSAVSN 271
           +GD  G  S VD QN+  E S   N
Sbjct: 84  NGDTNGDTSQVDDQNESLEASVNEN 108


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 109 YRCRTCHHR*VRAHFRRT 162
           + C+ CH R  R H  +T
Sbjct: 10  FECQECHKRFTRDHHLKT 27


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 235 NGDRYELVDDGRPNGDRFEFVDNG 164
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 235 NGDRYELVDDGRPNGDRFEFVDNG 164
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 235 NGDRYELVDDGRPNGDRFEFVDNG 164
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 235 NGDRYELVDDGRPNGDRFEFVDNG 164
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 235 NGDRYELVDDGRPNGDRFEFVDNG 164
           +G++ +LV +    GD  +F+ NG
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNG 175


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 109 YRCRTCHHR*VRAHFRRT 162
           + C+ CH R  R H  +T
Sbjct: 163 FECQECHKRFTRDHHLKT 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,852
Number of Sequences: 336
Number of extensions: 2518
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)