Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0177
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.62 
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.82 
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    28   1.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   1.9  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.3  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    26   5.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 28/107 (26%), Positives = 44/107 (41%)
 Frame = -3

Query: 510  GLWESRRSLAWSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRDNGIDTGSGDNR 331
            G++ S R  + S GSN  +    G G      G+S     +  + GF  +G   GSG N 
Sbjct: 869  GMYSSSRQSSRS-GSNTHSHAGPGFGGPSERKGISR----LGIDRGFSSSGAGFGSGSNY 923

Query: 330  GRASLVDVQNDLHERSAVSNGGKRRVSTIAGPTEIGTNSSTMAGPTE 190
              A    V +  H   + S+ G +R S   G      + S++  P +
Sbjct: 924  KSAPSRGVSHHGHGGMSGSHRGSQRGSRRGGGERDKPDPSSLTIPVD 970


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 1/125 (0%)
 Frame = -3

Query: 429 IDNNHGLSNDFGFVN-DNHGFRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRV 253
           + +N  LS++  ++N D +  R   +D    +N GR   V+        SAV+      +
Sbjct: 15  VTSNDELSSNKIYMNADQNNSRKKEMDGSLQNNGGRLQNVNPLGGNESMSAVATSAASSL 74

Query: 252 STIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAVPA 73
            T      +   S T+   T    +   M+G    G  S    G T  GT  +     P 
Sbjct: 75  PTAENGVSLNAASPTIHSNTPTVVSHPVMSGSELKGEESHNSPG-TLNGTSVANASKQPN 133

Query: 72  TPGLT 58
            P  T
Sbjct: 134 MPNAT 138


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 237 PTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAVPATP 67
           P+ +G+N   +  P   GSN  T A    + + +S  +G       +SM    P TP
Sbjct: 140 PSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLTP 196


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -3

Query: 444 LGDGAIDNNHGLSNDFGFVNDNHGFRDNGIDTGSGDNRGRA-SLVDVQNDLHERSAVSNG 268
           LG    +NN+  SN   + N+N G  +      S   +G A S ++  +    +   +N 
Sbjct: 557 LGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNN 616

Query: 267 GKRRVSTIAGPTEIGTNSSTMAGPTEIGSNSLTMA 163
             +             N+S+  G ++ GS  L  A
Sbjct: 617 NNQNYGNNNNQNYNNNNNSSQGGNSQGGSGLLGQA 651


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = -3

Query: 285 SAVSNGGKRRVSTIAGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIG 106
           S++S+     VS+ +  +  G+ SS  A      SNS      T   S SS  AG ++  
Sbjct: 173 SSISSSASSSVSSSSASSS-GSISSADAKTVSASSNSTISGFSTSTTSASSSAAGNSSSS 231

Query: 105 TKSSMMGAV 79
           + +S  GAV
Sbjct: 232 SYTSYSGAV 240


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 190  DRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSSSGNAGTHQALSRAGDSNG-HHGS 14
            +R    ++  S+ N  + + +G+  + R     D S   N+  + A+SRAG SNG + G+
Sbjct: 1496 ERSSEANHRTSNDNKRDEVTEGKDKNKR----QDISGESNSRQNNAISRAGRSNGSNRGN 1551

Query: 13   EGQE 2
            + ++
Sbjct: 1552 DSRD 1555


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 345 SGDNRGRASLVDVQNDLHERSAVSNGGKRRVSTIAGPTEIGTNSSTMAG 199
           +G+ R    ++D+  DL+E        K  +     P E  TNS+T  G
Sbjct: 252 AGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPTRAPVETSTNSNTWYG 300


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 22/86 (25%), Positives = 33/86 (38%)
 Frame = -3

Query: 351 TGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVSTIAGPTEIGTNSSTMAGPTEIGSNSL 172
           T S  N   +S+    + +   + VSN      S  A      TNSST+A    + S+S 
Sbjct: 743 TASSSNTLLSSITS-SSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSS 801

Query: 171 TMAGPTEMGSNSSMMAGPTAIGTKSS 94
                +     ++    PT   T SS
Sbjct: 802 RTISTSSTNEYNTSFHAPTVSSTTSS 827


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 256 PPLAPVADSTPLVQIILNINQASSAPIVPGP 348
           PP+APVA   P V     +     AP VP P
Sbjct: 607 PPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,794
Number of Sequences: 5004
Number of extensions: 42822
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)