Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0176
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0869 + 20421368-20421548,20421781-20422664,20422747-204229... 46 3e-05
02_01_0048 + 343154-343580,343956-344827,345830-346519 46 3e-05
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405... 44 1e-04
02_04_0098 + 19701999-19702185,19703698-19704551,19704732-197048... 44 2e-04
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 42 5e-04
04_04_1493 - 33977964-33978176,33978254-33978347,33978452-339788... 42 6e-04
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 42 6e-04
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757... 39 0.004
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411... 38 0.013
09_04_0549 + 18478475-18478664,18479381-18480648 30 2.6
09_04_0547 + 18467016-18467205,18467922-18469189 30 2.6
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646 29 6.0
03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350 28 7.9
>04_03_0869 +
20421368-20421548,20421781-20422664,20422747-20422905,
20423008-20423252,20423360-20423453,20423580-20423768
Length = 583
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 254 HSADFRDPKI-WKFKD-HWYVVIGSSSNKRGRVLLYRSGDLFNWEFLSVLGESDGDMGYM 427
+++ FRDP W D HW +++GS N +G +LYRS D W + M
Sbjct: 176 NASAFRDPTTAWYGPDGHWRLLVGSKVNMKGLAVLYRSRDFKKW--VKAHHPLHSAHTGM 233
Query: 428 WECPDLF 448
WECPD F
Sbjct: 234 WECPDFF 240
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +1
Query: 535 YYIGELDYETFEFKTDKYFQELDYG-----HDFYATQTIQGDGKTYLI--GWFNMWEVPH 693
Y +G D+ T + D F + DYG DFYA+++ K I GW N +
Sbjct: 285 YTVGWYDHATDRYVPDAAFPDNDYGLRYDYGDFYASKSFYDPAKRRRIVWGWANESDTVP 344
Query: 694 LEKEDGWAGTTTLVRELQL 750
++ GWAG + R+L L
Sbjct: 345 DDRRKGWAGIQAIPRKLWL 363
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIP----ETEMCFSGGAVVHGDDL-VLLYTGRVTTDTDPFYN 170
W H S++LIDW L + P + + C+SG A V + V++YTG DP
Sbjct: 87 WAHSVSTDLIDWTALEPGIYPSKTFDEKGCWSGSATVLPSGVPVIMYTG-----IDPDER 141
Query: 171 ETQYLAF 191
+ Q +A+
Sbjct: 142 QVQNVAY 148
>02_01_0048 + 343154-343580,343956-344827,345830-346519
Length = 662
Score = 46.4 bits (105), Expect = 3e-05
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIP----ETEMCFSGGAVVHGDD-LVLLYTGRVTTDTDPFYN 170
WGH S +L+ W HLP A++P + ++G A D L +LYTG
Sbjct: 170 WGHAVSRDLVHWRHLPLAMVPDQWYDVNGVWTGSATTLPDGRLAMLYTGSTNASV----- 224
Query: 171 ETQYLAFSNDG-----VNFRKYEGNPVLSYVP 251
+ Q LA +D N+ KY NPVL Y P
Sbjct: 225 QVQCLAVPSDPDDPLLTNWTKYHANPVL-YPP 255
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 263 DFRDPKI-WKFKDH--WYVVIGSSSNKR-GRVLLYRSGDLFNWEFLSVLGESDGDMGYMW 430
DFRDP W+ W +VIGS G ++YR+ D ++ L L G MW
Sbjct: 262 DFRDPTTAWRDPSDGDWRIVIGSKDEHHAGIAVVYRTADFVTYDLLPGLLHRVEATG-MW 320
Query: 431 ECPDLFELGG 460
EC D + + G
Sbjct: 321 ECIDFYPVAG 330
>04_04_0632 +
26738969-26739350,26739535-26739543,26739674-26740545,
26743048-26743098,26743966-26744127,26744278-26744519,
26744772-26744859,26744964-26745158
Length = 666
Score = 44.0 bits (99), Expect = 1e-04
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIPETEMCFSG---GAVVHGDD--LVLLYTGRVTTDTDPFYN 170
WGH S +LI W HLP A++P+ +G G+ D +V+LYTG T ++ N
Sbjct: 157 WGHAVSRDLIHWLHLPLAMVPDHWYDINGVWTGSATQLPDGRIVMLYTG-ATEESVQVQN 215
Query: 171 ETQYLAFSNDGV--NFRKYEGNPVLSYVPDIQL 263
+ A ND + + K E NPVL P I L
Sbjct: 216 LAE-PADPNDPLLREWSKAEANPVLVPPPGIGL 247
Score = 37.9 bits (84), Expect = 0.010
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 263 DFRDPKI-WK--FKDHWYVVIGSSSNKR-GRVLLYRSGDLFNWEFLSVLGESDGDMGYMW 430
DFRDP W+ W + IGS G L+Y++ D +++ L L G MW
Sbjct: 249 DFRDPTTAWRNPADSAWRITIGSKDRDHAGLALVYKTEDFLHYDLLPTLLHVVKGTG-MW 307
Query: 431 ECPDLF 448
EC DL+
Sbjct: 308 ECVDLY 313
>02_04_0098 +
19701999-19702185,19703698-19704551,19704732-19704890,
19705290-19705537,19705837-19705927,19706066-19706251
Length = 574
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 254 HSADFRDPKI-WKFKDHWYVVIGSSSNKR-GRVLLYRSGDLFNWEFLSVLGESDGDMGYM 427
++ FRDP W HW +++G R G LYRS D W + + M
Sbjct: 180 NATQFRDPTTAWYADGHWRMLVGGLKGARLGLAYLYRSRDFKTW--VRAKHPLHSALTGM 237
Query: 428 WECPDLFEL 454
WECPD F L
Sbjct: 238 WECPDFFPL 246
Score = 32.3 bits (70), Expect = 0.48
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 601 DYGHDFYATQTIQGDGK--TYLIGWFNMWEVPHLEKEDGWAGTTTLVRELQL 750
DYG+ FYA++T K L+GW N + +K GWAG + R++ L
Sbjct: 305 DYGN-FYASKTFFDPVKHRRILLGWANESDSVTYDKAKGWAGIHAIPRKVWL 355
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIPETEM----CFSGGAVVHGDDL-VLLYTG 137
W H S +LI+W L A+ P+ C+SG A + D +LYTG
Sbjct: 89 WAHSVSQDLINWIALEPAIKPDIPSDQYGCWSGSATILPDGTPAILYTG 137
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 42.3 bits (95), Expect = 5e-04
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Frame = +2
Query: 227 KSSPLLR----ARHSADFRDPKI-WKFKDH-WYVVIGSSSNKRGRVLLYRSGDLFNWEFL 388
K++PL+ +S FRDP W D W + +G+ N LLY+S D W +
Sbjct: 317 KNNPLIEPVGPGLNSNQFRDPTTGWIGPDGLWRIAVGAELNGYSAALLYKSKDFMQWTRV 376
Query: 389 SVLGESDGDMGYMWECPDLFE-LGGK 463
S + MWECPD F L GK
Sbjct: 377 DHPLYS-SNASNMWECPDFFAVLPGK 401
Score = 36.7 bits (81), Expect = 0.023
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIPETEM----CFSGGA-VVHGDDLVLLYTGRVT 146
WGH S++LI+W L A+ T C++G A ++ GD V++YTG T
Sbjct: 240 WGHSVSTDLINWIRLEPAIEGNTPSDINGCWTGSATILTGDQPVIIYTGADT 291
>04_04_1493 -
33977964-33978176,33978254-33978347,33978452-33978855,
33978944-33979818,33980212-33980293
Length = 555
Score = 41.9 bits (94), Expect = 6e-04
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIP----ETEMCFSGGA-VVHGDDLVLLYTGRVTTDTDPFYN 170
WGH S +L++W L TA+ P + C+SG A V+ G LYTGR D
Sbjct: 56 WGHSVSGDLVNWAFLGTAIDPTDPFDVNGCWSGSATVLLGGRPAFLYTGR-----DAGGV 110
Query: 171 ETQYLAFSNDGVN--FRKYEG---NPVLSYVPDIQLISETPRFGNSKIIGMLSLAAQAIN 335
+ Q ++F+ + ++ R++E NP++++ D+ I+ R + +G L +
Sbjct: 111 QVQNVSFAKNPLDPLLREWEKPSCNPIIAFPADV--INNNFRDPTTAWLGRDGLWRMVVA 168
Query: 336 GEECSFTDQGICLIGSFCRSWENQTATWATCGNVPI 443
E + F R WE A + VP+
Sbjct: 169 AEVAGAGSALVYRSADFLR-WERNAAPMHSSAAVPV 203
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 254 HSADFRDPKI-WKFKD-HWYVVIGS-SSNKRGRVLLYRSGDLFNWEFLSVLGESDGDMGY 424
++ FRDP W+ D HW +++GS + RG +YRS D W + S G
Sbjct: 186 NATQFRDPTTAWRGADGHWRLLVGSLAGQSRGVAYVYRSRDFRRWTRAAQPLHS-APTG- 243
Query: 425 MWECPDLF 448
MWECPD +
Sbjct: 244 MWECPDFY 251
Score = 33.1 bits (72), Expect = 0.28
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 505 RRYKNTYQTGYYIGELD-YETFEFKTDKYFQELDYGHDFYATQTIQGDGKTYLI--GWFN 675
RRY + Y G Y + + Y + D++ DYG+ FYA++T K I GW N
Sbjct: 288 RRY-DYYTVGTYDRKAERYVPDDPAGDEHHIRYDYGN-FYASKTFYDPAKRRRILWGWAN 345
Query: 676 MWEVPHLEKEDGWAGTTTLVRELQL 750
+ + GWAG + R++ L
Sbjct: 346 ESDTAADDVAKGWAGIQAIPRKVWL 370
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIPETEM----CFSGGAVVHGDDL-VLLYTG 137
W H S +LI+W L A+ P C+SG A + D V++YTG
Sbjct: 95 WAHSVSRDLINWVALKPAIEPSIRADKYGCWSGSATMMADGTPVIMYTG 143
>04_04_1492 -
33974804-33975040,33975121-33975214,33975351-33975754,
33975855-33976747,33977014-33977167
Length = 593
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 263 DFRDPKI-WKFKDH-WYVVIGSSSNKRGRVLLYRSGDLFNWEFLSVLGESDGDMGYMWEC 436
+FRDP W D W I + ++ G L+YRS D WE + + D M EC
Sbjct: 172 NFRDPTTAWLGSDGLWRFAISAVADGVGATLVYRSADFLRWERNAAPLHASRD-AVMAEC 230
Query: 437 PDLF 448
PDLF
Sbjct: 231 PDLF 234
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIP----ETEMCFSGGAVVHGDDL-VLLYTG 137
WGH S +L++W L AL P + C SG + D + V++Y+G
Sbjct: 80 WGHSVSGDLVNWAALDNALDPTAPFDANGCASGSVTILPDGVPVVMYSG 128
>09_02_0085 +
4111333-4111492,4114766-4116044,4116113-4116206,
4116297-4116545
Length = 593
Score = 37.5 bits (83), Expect = 0.013
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = +3
Query: 6 WGHVSSSNLIDWEHLPTALIP----ETEMCFSGGA-VVHGDDLVLLYTGRVTTDTDPFYN 170
WGH S +L++W L TAL P + C+SG A ++ G +LYTG D
Sbjct: 82 WGHSVSGDLLNWAALDTALDPTSPFDANGCWSGSATILPGALPAILYTG-----IDASKE 136
Query: 171 ETQYLAFSNDGVN--FRKYEG---NPVLSYVPDI 257
+ Q +AF+ + + R++E NPV++ D+
Sbjct: 137 QVQNVAFAKNPSDPLLREWEKPAYNPVIALPADV 170
Score = 36.3 bits (80), Expect = 0.030
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 266 FRDPKI-WKFKDH-WYVVIGSSSNKRGRVLLYRSGDLFNWEFLSVLGESDGDMGYMWECP 439
FRDP W +D W + + + + L+YRS D WE + + G M ECP
Sbjct: 175 FRDPSTAWLGRDGLWRIAVSAEVDGVASTLVYRSKDFVRWERNAAPLHASRAAG-MVECP 233
Query: 440 DLF 448
DLF
Sbjct: 234 DLF 236
>09_04_0549 + 18478475-18478664,18479381-18480648
Length = 485
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 54 TALIPETEMCFSGGAVVHGDDLVLLYTGRVT 146
TA IP E+ F+GGA V D +LY +V+
Sbjct: 410 TAQIPTVELAFAGGATVSLDFTGVLYVSKVS 440
>09_04_0547 + 18467016-18467205,18467922-18469189
Length = 485
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 54 TALIPETEMCFSGGAVVHGDDLVLLYTGRVT 146
TA IP E+ F+GGA V D +LY +V+
Sbjct: 410 TAQIPTVELAFAGGATVSLDFTGVLYVSKVS 440
>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
Length = 378
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 35 RLGTPPYGSHP*NRNV 82
RLG PPYGS P N++V
Sbjct: 272 RLGAPPYGSSPANKSV 287
>03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350
Length = 358
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 601 DYGHDFYATQTIQGDGK--TYLIGWFNMWEVPHLEKEDGWAGTTTLVRELQL 750
DYG+ FYA++T + L GW N + + GWAG + R++ L
Sbjct: 74 DYGN-FYASKTFLDTARHRRVLWGWANESDSAADDVRKGWAGVQAIPRKVWL 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,789,658
Number of Sequences: 37544
Number of extensions: 489637
Number of successful extensions: 1358
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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