Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0176
(829 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2) 30 2.0
SB_10334| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_35312| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_49152| Best HMM Match : Extensin_2 (HMM E-Value=2.4) 29 6.1
SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) 28 8.0
SB_54071| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 28 8.0
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 28 8.0
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/98 (22%), Positives = 48/98 (48%)
Frame = +3
Query: 9 GHVSSSNLIDWEHLPTALIPETEMCFSGGAVVHGDDLVLLYTGRVTTDTDPFYNETQYLA 188
G ++++ +D E +P ++ T + G+ D+ ++ + D DP++N++ Y
Sbjct: 627 GMITTATDLDREQIPQVVL--TVLVHDRGSPPLSDNCSVIVNLTDSNDNDPYFNQSSY-- 682
Query: 189 FSNDGVNFRKYEGNPVLSYVPDIQLISETPRFGNSKII 302
N +E +P S P +QL+++ P G + +I
Sbjct: 683 ------NASLFENSP--SGSPVVQLLAQDPDIGENSLI 712
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 32.3 bits (70), Expect = 0.49
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 174 TQYLAFSNDGVNFRKYEGNPVLSY 245
T YL FSNDG+N+ Y N +SY
Sbjct: 1133 TFYLRFSNDGLNYNPYGANASMSY 1156
>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
Length = 1388
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 439 RSV*TRRKNHFPLVPSRIGTERRRYKNTYQTGYYIGEL-DY-ETFEFKTDKYFQELDY-G 609
R V TR+K H I T R N Q+ Y +L DY + KT+ + + + +
Sbjct: 349 RFVPTRKKKHCKTSDDTIATNRSASSNVCQSSYGSEKLCDYLQRLIVKTEHFLRRMRWKA 408
Query: 610 HDFYATQTIQGDGKTY 657
H F T T +TY
Sbjct: 409 HFFLNTDTASTSKETY 424
>SB_10334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 714 PAVLFLKVRHFPHIKPANQVSLAVALYGLSRIKIVTVI*F 595
P ++ +R P I P NQV + + LYG K + + F
Sbjct: 134 PPIMVNTIRIIPEIYPVNQVCMRIELYGCLLTKAIGEVVF 173
>SB_35312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 731 SVVVPAQPSSFSRCGTSHILNQPIK*VLPSPCMV 630
+V +P QP+SFS+ H+LN P + +PC V
Sbjct: 39 NVSMPEQPASFSQISYPHLLNPPTE----APCEV 68
>SB_49152| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
Length = 360
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 21 SSNLIDWEHLPTALIPETEMCFSGGAVVHGD-DLVLLYTGRVTTDTDP 161
+++L+ +H+ TA+ P T + +SG + + LLY+G + T +P
Sbjct: 72 NTSLLYSDHMYTAVNPNTSLLYSGHMYTAANPNTTLLYSGHMYTAVNP 119
>SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 731 SVVVPAQPSSFSRCGTSHILNQP 663
+V +P QP+SFS+ H+LN P
Sbjct: 240 NVSMPEQPASFSQISDPHLLNPP 262
>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
Length = 1002
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 254 HSADFRDPKIWKFKDHWYVVIGSSSNKRGRVLLYRSGDLFNWEFL 388
HSA +W K++W + S+ + L+Y GD WEF+
Sbjct: 99 HSAYLGIESVWNDKNYWVNMQDCSNGVQD--LVYDLGDASKWEFM 141
>SB_54071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 46 TSLRLSSLKPKCASRAAPSSTEMTWY 123
T+L+ SL C SRA PSS + T+Y
Sbjct: 97 TALQGKSLALSCESRAKPSSCDFTFY 122
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 444 CLNSAEKPFSSGPLKDWNRK 503
CL + E P SGP+ W RK
Sbjct: 13 CLKNFEAPLKSGPIPRWQRK 32
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 8.0
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Frame = +3
Query: 99 VVHGDDLVLLYTGRVTTDTDPFYNETQYLAFSNDGVNFRKYEGNPVLSYVPDIQLISETP 278
VV GD ++YT + + Q +++D + +GN + + + S P
Sbjct: 266 VVCGDGEYIIYTAMALRNKS--FGSAQEFVWASDSSEYGVRDGNKIKLFKNFKERKSFKP 323
Query: 279 RFGNSKIIGMLSLAAQAINGEECSFTD-QGICLIGSFCRSWENQTATWATCGNVPICLNS 455
FG I G L ++++G +F D + LI + +T W+ G + C+++
Sbjct: 324 EFGAENIFGGHLLGVRSVSG--LTFYDWESTELIRRI--EIQPKTVFWSDSGEL-CCIST 378
Query: 456 AEKPF 470
E F
Sbjct: 379 EESYF 383
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,794,736
Number of Sequences: 59808
Number of extensions: 548623
Number of successful extensions: 1475
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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