Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0176
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z80216-7|CAB02283.2|  262|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 297 IIGMLSLAAQAINGEECSFTDQGICLIGSFCRSWENQTATWATCGN 434
           I G +  A    +   C+ T    C++G     W +  A   TCGN
Sbjct: 783 ICGPVEAAEDETDPVPCTTTTPACCVLGGVWSEWSSGDACNDTCGN 828


>Z80216-7|CAB02283.2|  262|Caenorhabditis elegans Hypothetical
           protein F10G8.7 protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 204 VNFRKYEGNPVLSYVPDIQ 260
           VN R+ EGNPVL YV +++
Sbjct: 53  VNRRRQEGNPVLKYVRNVR 71


>U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical
           protein F54C1.1 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 755 PISCSSLTSVVVPAQPSSFSRCGTSHILN 669
           P+S   +TS+ +PA P+S  + GT H  N
Sbjct: 172 PLSDGYVTSLNLPASPASVPKTGTHHSSN 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,861,941
Number of Sequences: 27780
Number of extensions: 404027
Number of successful extensions: 1024
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)