Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0176
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 202 ELTSASMKEIQSSPTCPTFS*FQRPQDLEIQ 294
           EL  AS+ +    P CP F     P D  I+
Sbjct: 553 ELHRASLSKTPQPPQCPRFRKLDSPSDSGIE 583


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 616 FYATQTIQGDGKTYLI 663
           FY   ++QGDGK +L+
Sbjct: 173 FYIYPSLQGDGKFHLL 188


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 616 FYATQTIQGDGKTYLI 663
           FY   ++QGDGK +L+
Sbjct: 173 FYIYPSLQGDGKFHLL 188


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 773 VHGDRV-PISCSSLTSVVVPAQPSSFSRCGTSHILNQP 663
           V  DR  P+        ++ +QPS      +SHIL QP
Sbjct: 416 VSPDRTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQP 453


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 129 YTGRVTTDTDPFYNETQY 182
           Y  + +T+T P YN+  Y
Sbjct: 530 YDSKSSTETPPSYNQLNY 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,932
Number of Sequences: 438
Number of extensions: 5093
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)