Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0174
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    29   0.60 
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    26   5.6  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   5.6  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   7.4  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   7.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   7.4  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    25   9.8  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   9.8  

>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -3

Query: 754 HLSCELLRSYCK---HSDELITSIYCLPD 677
           H  CE++RS  +   HS EL+  I CLPD
Sbjct: 171 HQYCEMVRSLLQSMGHSPELVQCITCLPD 199


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +2

Query: 506 QPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDACSHSYAYVFYAESIRQ 685
           +P   N +E L T  G   +  P G  + +P GG G  GC+++         F  + I  
Sbjct: 138 RPSFKNALEEL-TKKGKKPFPIPAGCSE-HPYGGLGFVGCVEEIYEQEKQLGFKFDKIVV 195

Query: 686 AVDGGNEFVGML 721
               G+ F G++
Sbjct: 196 CTVTGSSFAGII 207


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  VSEPLLLSVNSIMTSSFSLARRTIFTIHN-HGETVAGNFNAFVIPAHLAAEDVNVIA 252
           VS+ L+ S++ I + SFSL  + +F +HN  GE++        + A  ++++V  IA
Sbjct: 316 VSDMLIQSLSIINSPSFSLG-KIVFLVHNIDGESLIDERFQSALAAIASSKNVYFIA 371


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 509 PDDANIVEVLHTTAGLIGYDYPLGDLDFY-PSGG 607
           P D +I  VLH TA +I   +    +DF+ P GG
Sbjct: 178 PLDFSITIVLHLTAVVISIIFSFAYMDFFLPRGG 211


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 615 KADAWTMPAPILTPMFSTPNLS 680
           KA +  M A +  P FSTPNLS
Sbjct: 297 KARSLLMDASLKLPQFSTPNLS 318


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 25  SFNLGERDVVFHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNA 204
           S N G+   + H F+R S +  + LL+   S +      ++   F        +   F  
Sbjct: 545 SLNFGKISFISHEFYRVSKRFLDILLIWFESYLVEELDNSKSIFFLF-----KIYKVFEV 599

Query: 205 FVIPAHLAAEDV 240
           FV+P   +AE++
Sbjct: 600 FVVPHFASAEEL 611


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 736 LRSYCKHSDELITSIYCLPDRFGVENIGVRMGAG 635
           ++ Y + ++++  SI    DRF +  IG+RM  G
Sbjct: 189 IQEYRRKTNQIDNSIQIFLDRFYMSRIGIRMLLG 222


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 210 DESVEVS-SDSFTVIVYREDGAASEGERRSHNRVDR*QQRFTDLRASPMKEVKYNIPFSQ 34
           DE  E+   D F   +  E GA   G+ R H  +DR +Q    + A  + E +Y   + +
Sbjct: 162 DEEDEIGREDGF---IEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAE-EYREKYGR 217

Query: 33  IETV 22
            +TV
Sbjct: 218 SQTV 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,261
Number of Sequences: 5004
Number of extensions: 61859
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)