Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0174
(819 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07) 51 1e-06
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 43 3e-04
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 39 0.004
SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) 29 3.4
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9) 29 4.5
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 7.9
SB_11697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +2
Query: 446 SSHYCSGPISPRLDSQP*NSQPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 625
S H+ + + RLD P DA+ V+V+HT L G G +DFYP+GG Q GC
Sbjct: 725 SIHFVNAHVDVRLD-------PSDADFVDVMHTDMDLAGTPTVSGHIDFYPNGGKKQPGC 777
Query: 626 LD--DA------CSHSYAYVFYAESI 679
D D C H A +YAES+
Sbjct: 778 RDLLDGPINYVICDHMRAPEYYAESV 803
>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
Length = 408
Score = 51.2 bits (117), Expect = 1e-06
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +2
Query: 509 PDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDA--------CSHSYAYVF 664
P DA V+V+HT G G +DFYP+GG Q GC D A C H A+ +
Sbjct: 20 PSDAEFVDVMHTDMDFAGTSTQSGHIDFYPNGGKNQPGCRDIADGPSNALKCDHVRAHDY 79
Query: 665 YAESI 679
+ ESI
Sbjct: 80 FTESI 84
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 515 DANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 625
DA V+V+HT+ + G P G +DFYP+GG+ Q GC
Sbjct: 225 DAQFVDVIHTSY-VFGITAPHGHMDFYPNGGTSQRGC 260
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 515 DANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 625
DA V+V+HT+A G +G DFYP+GG Q GC
Sbjct: 243 DALFVDVIHTSADY-GITSTIGHADFYPNGGKKQPGC 278
>SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11)
Length = 829
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 327 QQLIDRIDERWPDPRCIISIQDSSHGDYVYIFSGEVSGYDES-VEVSSDSFTVIV 166
Q+L+ + + D + + DS H Y Y G GY ES V V S F V V
Sbjct: 649 QELLSDLQQAVDDGKLVSFTVDSKHRLYNYNTKGPTGGYRESAVGVDSGLFVVAV 703
>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
Length = 554
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 431 ISSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTS 300
++S T+ +T TK++ A S +EF++ STALT+
Sbjct: 484 VTSASTTATTTSTKTNEVTSASTTATTTSTKTNEFTSASTALTT 527
>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 55 FHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAE 234
F LF R P + V + S++ +RT H + E+ + ++ + A L +
Sbjct: 72 FQLFTRSHPHLVSIDDSDVKKLKASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKD 131
Query: 235 DVNVI 249
DVNV+
Sbjct: 132 DVNVV 136
>SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 739 LLRSYCKHSDELITSIYCLP 680
L+ +YCKHSD+ + S++ LP
Sbjct: 268 LVLAYCKHSDKFLKSLHGLP 287
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 739 LLRSYCKHSDELITSIYCLP 680
L+ +YCKHSD+ + S++ LP
Sbjct: 3144 LVLAYCKHSDKFLKSLHGLP 3163
>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1644
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 739 LLRSYCKHSDELITSIYCLP 680
L+ +YCKHSD+ + S++ LP
Sbjct: 297 LVLAYCKHSDKFLKSLHGLP 316
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 49 VVFH----LFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETV 186
VV+H +FH+ P V++P+L S +S + ++A+ +H G +
Sbjct: 68 VVYHQPPIVFHQPPPAVNQPMLYSHDSFVMHPAAVAQHVNSVVHEGGRYI 117
>SB_11697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 739 LLRSYCKHSDELITSIYCLP 680
L+ YCKHSD+ + S++ LP
Sbjct: 146 LVLGYCKHSDKFLKSLHGLP 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,663,868
Number of Sequences: 59808
Number of extensions: 483655
Number of successful extensions: 1334
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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