Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0174
         (819 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52400.1 68418.m06501 cytochrome P450 family protein similar ...    29   3.7  
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa...    29   3.7  
At2g28870.1 68415.m03509 expressed protein                             29   4.9  
At5g12280.1 68418.m01444 hypothetical protein                          28   6.5  
At4g23990.1 68417.m03448 cellulose synthase family protein simil...    28   6.5  
At2g35010.1 68415.m04295 thioredoxin family protein similar to S...    28   6.5  

>At5g52400.1 68418.m06501 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) (cytochrome P450 lxxii
           hydroxylase) (ge10h) [Catharanthus roseus]
          Length = 519

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 606 VAVKADAWTMPAPILTPMFSTPNLSGKQ*MEVMSSSECLQ*LRRSSQLRCSGPE 767
           V V+ D WT    I+TP F+  NL     M V S S  L   R   Q+    PE
Sbjct: 154 VMVEGDDWTRHRHIITPAFAPLNLKVMTNMMVESVSNMLD--RWGIQINSGNPE 205


>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 146

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 178 HRDCVS*RWCGERGRT 131
           HRDC+  RWC E+G T
Sbjct: 46  HRDCIQ-RWCDEKGNT 60


>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 433 EFLAAIPAMCPPRPSPTMRISSES*LKV 350
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 187 AGNFNAFVIPAHLAAEDVNVIAVTGVLDRNYTPRVWPTLVNAVD 318
           A  F  +V+P     EDV+ I +T  +   Y    W  L+  VD
Sbjct: 156 APKFPDYVLPEGYTIEDVDTIFLTAQIVGRYGEEFWLDLIKEVD 199


>At4g23990.1 68417.m03448 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 732

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 392 WSRWTHRWYRS*KFKPTYSSHYCSGPIS-PRLDSQP*NSQPDDANIVEVLHTTAGLIGYD 568
           W+  T   Y+  + +  Y   Y + P   P+LD     + P     + V++T   ++ Y+
Sbjct: 71  WATTTSLRYKPVR-RTEYPEKYAAEPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYE 129

Query: 569 YPLGDLDFYPSGGSGQS 619
           YP   +  Y S   G S
Sbjct: 130 YPSDKISVYVSDDGGSS 146


>At2g35010.1 68415.m04295 thioredoxin family protein similar to
           SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 194

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 94  PLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIP 216
           PL+L+ NSI   S  +AR ++FT  N G ++  NF+   +P
Sbjct: 34  PLVLAPNSI---SSLIARNSLFTASNIGPSIDFNFSNTSLP 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,846
Number of Sequences: 28952
Number of extensions: 344196
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)