Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0172
         (456 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   2.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 2   QQQHPAHQPSQWKQQLCWYLG 64
           Q+QHP H     +QQ   Y G
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGG 192


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 2   QQQHPAHQPSQWKQQLCWYLG 64
           Q+QHP H     +QQ   Y G
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGG 194


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -3

Query: 373 VERCDSSEAGRVASLAASV*SERRDTDQLTAS 278
           VE C   +AG    L A      RD  Q T+S
Sbjct: 37  VELCKDKDAGEWFRLVAGEGDNCRDVIQCTSS 68


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 448 NEIILLLKNHSAFVSRHLNSSPDPGVERCDSSEAGRVASL 329
           +E++L+LKN    ++  L         +  S   GR+ +L
Sbjct: 542 SELVLMLKNRFVTLNVQLTKLTKNCATKAQSVVLGRICTL 581


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,266
Number of Sequences: 336
Number of extensions: 1462
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)