Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0172
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   1.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.8  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.5  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   5.5  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    24   9.6  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 117 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCV 212
           ++ R V ++ ITNA C + Y   VI G+ L +
Sbjct: 461 KRSRLVYIEKITNAACYQEYSAIVINGTALAI 492


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 313 SERRDTDQLTASAAADGERAPESPL 239
           ++  D    +A  A+DGE +PE+PL
Sbjct: 504 NDNNDASLQSAGVASDGESSPETPL 528


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 424 NHSAFVSRHLNSSPDP 377
           +HS+ + R+LN+ PDP
Sbjct: 436 DHSSIIQRYLNAHPDP 451


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 418  SAFVSRHLNSSPDPGVERCDSSEAGRVASLAASV*SERRDTDQLTASAAADGE 260
            S+  S H N+SP P      S+   R +   +   +ER +T   +  ++  GE
Sbjct: 1254 SSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGE 1306


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 23   QPSQWKQQLCWYLGLGCR 76
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 393 ILARIQELKDVTLAKPAG*PLWQPLSDPND 304
           I+ R  ++KD+ + +PA  P   P+  PND
Sbjct: 64  IVFRGSDVKDLRIEEPATTPSAPPVQPPND 93


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 277 AAADGERAPESPLQVLRPLAPETQRVEPMITEF 179
           AAA    +  +P QV  P+  +TQ V P+   +
Sbjct: 300 AAAAAAASATAPPQVTSPMVSQTQPVNPITPNY 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,013
Number of Sequences: 5004
Number of extensions: 22623
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)