Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0172
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 30 1.0
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 1.3
07_01_0466 - 3518315-3521428 29 1.8
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 29 2.3
12_02_1109 + 26151421-26153601 28 3.1
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 28 4.1
04_04_1301 - 32479307-32479837 28 4.1
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 27 5.4
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 27 9.5
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 27 9.5
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +2
Query: 59 LGLGCRLREDLRCC--FGSQQ-----PTKTPSEPPGHHQRRLRPHVRKLCDHWL 199
LGLG LR L CC +GS++ P P G+H RL P V LC W+
Sbjct: 128 LGLGTALRLALECCQEWGSRRSMPRLPMDGSMAPSGYHPVRLWPAV--LCLGWV 179
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 409 VSRHLNSSPDPGVERCDSSEAGRVASLAASV*SERRDTDQLTASAAADGERAPESPL 239
VS H +SSP+ +E + ASL + + E R D +S A G++A +P+
Sbjct: 1539 VSLHSSSSPNLNKGTVSLAEPAKKASLDSVMAVESRIIDPAESSVALKGDKASMTPI 1595
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 337 ASLAASV*SERRDTDQLTASAAADGERAPESPLQVLRPLAPETQRVEPMITEFP 176
A+ AA+ E + + AA E APE Q+L P P T PM+ + P
Sbjct: 205 AAAAATSAPEEEAPVMASEAVAASAEAAPEEE-QILTPPPPPTPTPTPMLRQVP 257
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -3
Query: 283 ASAAADGERAPESPLQVLRPLAPETQRVEPMITEF 179
ASAAA+G +PE PL+V ET VEP +TEF
Sbjct: 8 ASAAAEGG-SPE-PLEVRCAGCGETLEVEPGLTEF 40
>12_02_1109 + 26151421-26153601
Length = 726
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -3
Query: 433 LLKNHSAFVSRHLNSSPDPGVERCDSSEAGRVASLAASV 317
L KN S + RHL+ P C S+ AG +AS +ASV
Sbjct: 5 LTKNPSPLLHRHLHLLLQPR-RLCSSATAGELASESASV 42
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 260 LSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWIR 385
+S+GS R+ G F + CQ GYPA FA F +R
Sbjct: 7 ISLGSSRRRKR-GEMLFRFEAFCQPGYPANFAGAGGFRDNVR 47
>04_04_1301 - 32479307-32479837
Length = 176
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 361 DSSEAGRVASLAASV*SERRDTDQLTASAAADGERAPESPLQVLRPLAPE 212
D+ + V S + +V + D S A G AP+ L++L LAPE
Sbjct: 89 DTGDVAIVCSASDAVRFVEAECDADVRSVAGGGGDAPDDDLRLLEQLAPE 138
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 327 QPLSDPNDVIPIS*RPPPLPME 262
Q L+D N++ P+ PPPLP++
Sbjct: 1114 QALADQNELPPLPDGPPPLPLD 1135
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 11 HPAHQPSQWKQQLCWY 58
HP H+ Q +QQL WY
Sbjct: 711 HPLHKSDQSEQQLSWY 726
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 363 VTLAKPAG*PLWQPLSDPNDVI 298
V L K A PLWQ S P D +
Sbjct: 267 VVLGKDASSPLWQSFSHPTDTL 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,037
Number of Sequences: 37544
Number of extensions: 203123
Number of successful extensions: 876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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