Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0172
(456 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 31 0.45
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.60
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032) 30 0.79
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.79
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05) 30 1.0
SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0) 29 2.4
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 29 2.4
SB_52967| Best HMM Match : zf-CCCH (HMM E-Value=4.7) 29 2.4
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 28 4.2
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 28 4.2
SB_48658| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.4
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45) 27 9.7
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.7
SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWIRARI 394
PL S G L+G+TS+ + GY +A V F WIR +
Sbjct: 1977 PLVCESKGRWVLMGVTSWSYNGCADSGYAGVYADVVYFKDWIRQTV 2022
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 30.7 bits (66), Expect = 0.60
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 87 TSDAASGANNQQKRQVSLQVITNAVCARTYGNSVIIGSTLCVSGANGRSTCSGD 248
+SD + A+ Q+ +V L + C T G +V S +C GA G S C+GD
Sbjct: 422 SSDQHTLADKLQQSKVPL--VNYTTCRSTNGATVDENSMICAGGA-GSSACNGD 472
>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
Length = 807
Score = 30.3 bits (65), Expect = 0.79
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 92 RCCFGSQQPTKTPSEPPGHHQRRLRPHVRKLCDHWLH 202
+ C S P T PP H LRP R D LH
Sbjct: 708 QACASSSIPFSTTKHPPVHRYHSLRPSTRLFIDTILH 744
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWIRARI 394
PL G L G S+G+ R C Y F RV+S+ +WI +I
Sbjct: 681 PLVCEQSGVWVLHGAVSYGA-RWCPTDYYTVFTRVSSYVAWINGKI 725
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWIR 385
PL G L G S+G + C + FARV S+ WI+
Sbjct: 954 PLVCEDNGSWFLHGAVSYGM-KYCPTTHYTVFARVASYTDWIK 995
>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
Length = 872
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -3
Query: 394 NSSPDPGVERCDSSEAGRVASLAASV*SERRDTDQLTASAAADGERAPE-SPLQVLRPLA 218
+ SP PGV SS AG V S + + +R A + AD PE SP + A
Sbjct: 773 SQSPVPGVATPHSSPAGVVTSPSVTA-VPKRLLKSKRAMSEADLANTPEKSPSKTSASPA 831
Query: 217 PETQRVEP 194
P+T++ P
Sbjct: 832 PDTEQTPP 839
>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 908
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 CFGSQQPTKTPSEPP--GHHQRRLRPHVRK-LCDHWLHPLC 211
C SQ P S+ P H Q L H + LCDH +PLC
Sbjct: 779 CDHSQDPLYDHSQNPLCDHSQNPLYDHSQNPLCDHSQNPLC 819
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 385 PDPGVERCDSSEAGRVASLAASV*SERRDTDQLTASAAADGERAPESPLQVLRPLAP 215
PD + RCD + ++ + A + + ++ T S DGE SPLQ AP
Sbjct: 812 PDKNM-RCDYPDKKQLETAAPHTLTATKKRNRKTVSQGQDGENPISSPLQCQNHTAP 867
>SB_52967| Best HMM Match : zf-CCCH (HMM E-Value=4.7)
Length = 226
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 CFGSQQPTKTPSEPP--GHHQRRLRPHVRK-LCDHWLHPLC 211
C SQ P S+ P H Q L H + LCDH +PLC
Sbjct: 97 CDHSQDPLYDHSQNPLCDHSQNPLYDHSQNPLCDHSQNPLC 137
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +2
Query: 107 SQQPTKTPSEPP--GHHQRRLRPHVRK-LCDHWLHPLC 211
SQ P S+ P H Q L H + LCDH +PLC
Sbjct: 60 SQNPLCDHSQNPLYDHSQNPLYDHFQNPLCDHSQNPLC 97
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWIR 385
PL G L G S+G R C + FARV S+ WI+
Sbjct: 290 PLVCEDNGSWFLHGAVSYGL-RNCPTTHYTVFARVASYTDWIK 331
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWIR 385
PL G L G S+G R C + FARV S+ WI+
Sbjct: 624 PLVCEDNGSWFLHGAVSYGL-RNCPTTHYTVFARVASYTDWIK 665
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 28.3 bits (60), Expect = 3.2
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = -3
Query: 406 SRHLNSSPDPGVERCDSSEAGRVASLAASV*SERRDTDQLTASAAADGERAPESPLQVLR 227
S S P P ++ S R +S SE RD + +A E S R
Sbjct: 307 SESRGSPPSPAKKQRSESRDSR-----SSQSSENRDGEFNSAPHIGSSEGGIISRRSAFR 361
Query: 226 PLAPETQRVEPMITEF 179
P +P QR+ P IT F
Sbjct: 362 PWSPVGQRIPPTITPF 377
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWIR 385
PL G L G S+G C Y FARV S+ WI+
Sbjct: 269 PLVCEDNGRWYLHGAVSYGKLH-CPTTYYTVFARVASYTDWIK 310
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 126 RQVSLQVITNAVCARTYGNSVIIGSTLCV--SGANGRSTCSGD 248
+Q + +++ C R YG + S +CV + N S+C GD
Sbjct: 465 QQAKVPIVSKEDCKRAYGAIIRPYSHICVGFNTENAASSCQGD 507
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWI 382
PL GG L G S+G+ C +AR++S WI
Sbjct: 501 PLVCHEGGTWVLRGAVSWGTSHSCPGRMFVAYARISSHIDWI 542
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 126 RQVSLQVITNAVCARTYGNSVIIGSTLCVSGANGRSTCSGD 248
+Q V+ + CA +T+ +G +G S CSGD
Sbjct: 457 QQARTPVVDHETCAIKLDKFAADKTTMICAGGSGSSACSGD 497
>SB_48658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 65 LGCRLREDLRCCFGSQQPTKTPSEPPGHHQRRLRPHVRKL 184
LG R++ L C +++ T+ P+ P +RR H R+L
Sbjct: 107 LGSRMKLSLSCPSLTEEETEEPAHPREPLRRRDHTHTREL 146
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 27.1 bits (57), Expect = 7.4
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Frame = +2
Query: 8 QHPAHQPSQWKQQLCWYLGLGCRLREDLR--------CCFGSQQPTKTPSEPPGHHQRRL 163
+HPA Q W C+Y GL R++ DLR CC T+ P RR
Sbjct: 80 RHPARQ--LWHLH-CFYTGLTRRMQIDLRLRLLTLETCCGYEYDRTRKSMSSPNFQGRRE 136
Query: 164 RPHVRKLC 187
R K C
Sbjct: 137 RTGHHKKC 144
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = -3
Query: 454 FVNEIILLLKNHSAFVSRHLN-------SSPDPGVERCDSSEAGRVASLAAS 320
+ N+I LLL + A + R+ N SSP P RC S GR++S AS
Sbjct: 336 YANDIALLLLDRPARLDRYTNLACLAPRSSPLPDGTRCWISGWGRLSSGGAS 387
>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
Length = 234
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 126 RQVSLQVITNAVCARTYGNSVIIGSTLCVSGA--NGRSTCSGD 248
+Q + + ++ C R YG+ + + LC A N C GD
Sbjct: 88 QQARIPIASHEDCKRKYGSGIYSYTHLCAGEAKPNAAGACQGD 130
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 257 PLSIGSGGGRQLIGITSFGSDRGCQRGYPAGFARVTSFNSWI 382
P GG L G S+G C + FARV+SF WI
Sbjct: 261 PFVCNEGGRWVLRGAVSWGQPM-CGTDHYTVFARVSSFIDWI 301
>SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 122 KTPSEPPGHHQRRLRPHVRKLCDHW 196
K P GH L PH R +CDH+
Sbjct: 91 KPGRRPYGHLPHDLLPHGRGVCDHY 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,756
Number of Sequences: 59808
Number of extensions: 207202
Number of successful extensions: 677
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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