Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0172
(456 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 28 3.7
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 27 4.9
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 27 4.9
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 27 4.9
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 27 4.9
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 27 4.9
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 27 4.9
Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 257 PLSIGSGGGRQL-IGITSFGSD--RGC--QRGYPAGFARVTSFNSWIRARI*MTT 406
PL I G + IGITS+G+D G Q +P + R++ + WI+ I T+
Sbjct: 232 PLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVIGKTS 286
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +2
Query: 2 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 118
QQQH A Q +Q QQ Y G+ + D+ R FG P
Sbjct: 468 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 509
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +2
Query: 2 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 118
QQQH A Q +Q QQ Y G+ + D+ R FG P
Sbjct: 649 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 690
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 310 ERRDTDQLTASAAADGERAPESPLQVLRPLAPETQRVEPMITEFPYV 170
E + ++ A A E AP+ + P+A ET E E P V
Sbjct: 162 EEKPQEEAPAEEPAPAEEAPQEEVPAEEPVAEETAPAEEAAVEEPVV 208
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 310 ERRDTDQLTASAAADGERAPESPLQVLRPLAPETQRVEPMITEFPYV 170
E + ++ A A E AP+ + P+A ET E E P V
Sbjct: 112 EEKPQEEAPAEEPAPAEEAPQEEVPAEEPVAEETAPAEEAAVEEPVV 158
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 310 ERRDTDQLTASAAADGERAPESPLQVLRPLAPETQRVEPMITEFPYV 170
E + ++ A A E AP+ + P+A ET E E P V
Sbjct: 162 EEKPQEEAPAEEPAPAEEAPQEEVPAEEPVAEETAPAEEAAVEEPVV 208
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 310 ERRDTDQLTASAAADGERAPESPLQVLRPLAPETQRVEPMITEFPYV 170
E + ++ A A E AP+ + P+A ET E E P V
Sbjct: 162 EEKPQEEAPAEEPAPAEEAPQEEVPAEEPVAEETAPAEEAAVEEPVV 208
>Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 454 FVNEIILLLKNHSAFVSRHLNSSPDPGVERCDSSEAGRVASLAAS 320
++ ++LLLK H F SS +ER SS ++S +S
Sbjct: 446 YLPSVMLLLKLHILFSDVRATSSTQLSIERSQSSSPSVISSQCSS 490
>Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 454 FVNEIILLLKNHSAFVSRHLNSSPDPGVERCDSSEAGRVASLAAS 320
++ ++LLLK H F SS +ER SS ++S +S
Sbjct: 446 YLPSVMLLLKLHILFSDVRATSSTQLSIERSQSSSPSVISSQCSS 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,180,142
Number of Sequences: 27780
Number of extensions: 141826
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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