Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0172
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.68 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.8  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   6.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   8.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 358 SSEAGRVASLAASV*SERRDTDQLTASAAADGERAPESPLQVLRPLAPETQRV 200
           S  +G + S    V  E  + + L+ S ++ G   P SP   ++P++PE + +
Sbjct: 287 SPGSGGIRSDQMGVKIEPAEAESLSTSGSS-GILTPVSPYGYVKPISPEQEEL 338


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 296  GITSFGSDRGCQRG 337
            GITS GSD G   G
Sbjct: 1065 GITSSGSDSGSSNG 1078


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 324 PLSDPNDVIPIS 289
           P+SDPN +I IS
Sbjct: 106 PISDPNALIKIS 117


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 NSVIIGSTLCVSGANGRSTCSG 245
           ++V+I + +C SG  GR+   G
Sbjct: 136 SAVVITAAICTSGIVGRTHTVG 157


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 74  RLREDLRCCFGSQQPTKTPSEPPGHHQRRLRP 169
           RLR +     G+ +P   P   P H + R  P
Sbjct: 115 RLRREPEAEPGNNRPVYIPQPRPPHPRLRREP 146


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 GRQLIGITSFGSDRGCQRGYPAGFARVTSFN 373
           G+ L+    +GS++  +   P GF +V   N
Sbjct: 50  GQYLMPNIGYGSNKKTRHMLPTGFRKVLVHN 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,030
Number of Sequences: 438
Number of extensions: 1755
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)