Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0172
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    32   0.21 
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    32   0.21 
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   4.5  
At1g10750.1 68414.m01229 expressed protein similar to gi 3128199...    27   6.0  

>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = -3

Query: 400 HLNSSPDPGVERCDSSEAGRVASLAASV*SERRDTDQLTASAAADGERAPESPLQVLRPL 221
           HL + P P       S     AS +A    E R   ++  S   DGER    PL    P 
Sbjct: 70  HLQALPHPHSHSHSHSPLAAAASASAPYEVESRTVVKVARSEPRDGERRSPLPLVYRSPS 129

Query: 220 APET-QRVEPMITEFP 176
            P T    +P +T  P
Sbjct: 130 LPTTVSSSDPHLTHAP 145


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = -3

Query: 400 HLNSSPDPGVERCDSSEAGRVASLAASV*SERRDTDQLTASAAADGERAPESPLQVLRPL 221
           HL + P P       S     AS +A    E R   ++  S   DGER    PL    P 
Sbjct: 70  HLQALPHPHSHSHSHSPLAAAASASAPYEVESRTVVKVARSEPRDGERRSPLPLVYRSPS 129

Query: 220 APET-QRVEPMITEFP 176
            P T    +P +T  P
Sbjct: 130 LPTTVSSSDPHLTHAP 145


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 117 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCVSGANGRSTC 239
           +++RQ++L++    +  R +  S    +T  V+G NG S C
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45


>At1g10750.1 68414.m01229 expressed protein similar to gi 3128199
           F4I1.5 putative proteinase from Arabidopsis thaliana BAC
           gb AC004521
          Length = 467

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 110 QQPTKTPSEPPGHHQRRLRP 169
           Q+P   P  P GH++R LRP
Sbjct: 147 QKPLDPPERPRGHNRRGLRP 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,835,325
Number of Sequences: 28952
Number of extensions: 134417
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)