Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0166
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    28   5.5  
L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    27   7.3  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      27   7.3  
Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical p...    27   9.6  

>AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical
           protein T12F5.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -3

Query: 404 ISPNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLCKRS*LILANKIYQ 240
           I P+ F      + +D+N  HH +IE   ++   L Y+LR+  +S  +L  ++++
Sbjct: 83  IHPDAFTICSTCVLKDHNTTHHTVIE---YLPIRLNYQLRMNTKSADVLKTRVHK 134


>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -3

Query: 404 ISPNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLCKRS*LILANKIYQ 240
           I P+ F      + +D+N  HH +IE   ++   L Y+LR+  +S  +L  ++++
Sbjct: 33  IHPDAFTICSTCVLKDHNTTHHTVIE---YLPIRLNYQLRMNTKSADVLKTRVHK 84


>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 398 PNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLC 279
           PN FKE      E++NK+  +L++ I+ II  ++  L +C
Sbjct: 386 PNTFKEKVQIKKEESNKSWRDLMKLIRPIIGFVLIILLIC 425


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 398 PNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLC 279
           PN FKE      E++NK+  +L++ I+ II  ++  L +C
Sbjct: 386 PNTFKEKVQIKKEESNKSWRDLMKLIRPIIGFVLIILLIC 425


>Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical
           protein F09C6.7 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 187 LRIYWFLYFNN*SWFMFFWYILLANINYERLHSRSLYI 300
           L++YW  +F   S   F  YIL+ N   + L +   ++
Sbjct: 8   LQVYWLAFFITCSLLYFTMYILIFNFTTKDLRTMKYFL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,379,426
Number of Sequences: 27780
Number of extensions: 121398
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)