Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0161
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    30   0.24 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.2  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.8  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   9.0  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    25   9.0  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   9.0  

>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 RVFLLICSDGELPFKAAVYLTATPQARTHCD 532
           RVF+++  +GE P     + T TP AR +CD
Sbjct: 3   RVFIVV-KEGEDPTSLVFHFTGTPNARENCD 32


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 379  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFHRAHCDGKIQRN--ATVCRIV 230
            W +LLV  +  C NS   +R+G  Q   +IF+ + C  K+  N  A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN-SQC-SKLGTNAWASCCQLV 1073


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 503 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIMAPCWM 396
           PSD     T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 608 PNRRRICYQSRRDHDPCLFPAVFFVGHNEFELVGLPSDTLP 486
           P  RR+CY S     P L   V+ V       V  P+D+LP
Sbjct: 823 PTARRVCYSSFLTASPRLMEPVYMVE------VHAPADSLP 857


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 622 PTSPDQTGAEFVISHDAIMTLVCSLQFSLLV 530
           P SPD       +SH+  + L C  +FS++V
Sbjct: 74  PLSPDYLRIFTRVSHERWVFLTCGWEFSVIV 104


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 266 PVAVSPVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVPLSNKVS 430
           P  +  V YL+ T+  T+P +L  I   M A+ +   PS  A  + R+ +   V+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVT 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,743
Number of Sequences: 5004
Number of extensions: 61890
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)