Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0161
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    30   1.7  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    30   1.7  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     28   5.3  
06_03_0089 - 16475677-16476309                                         28   7.0  
12_02_0279 - 16704284-16704925                                         27   9.3  
06_01_1013 - 7931756-7935109                                           27   9.3  

>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 203 LKGSGSW*EQYQRTVGTIDSRWV 135
           +KG   W  +YQR  GTID  W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 203 LKGSGSW*EQYQRTVGTIDSRWV 135
           +KG   W  +YQR  GTID  W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 339 LRQGCEHRTSNTCHPLRPKHPAGCHYPTRCRNTPGYF 449
           L  GC+    N C   R K+P  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


>06_03_0089 - 16475677-16476309
          Length = 210

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 127 SIPTHLESMVPTVRWYCSHQLPLPFNCYLFPWRILRSCIPSHYA 258
           S P      VP V +YC+ +LP P    L   R+ R C   H A
Sbjct: 115 SRPAAQRCQVPAVPYYCATELPCP---PLLRRRLRRCCTGEHQA 155


>12_02_0279 - 16704284-16704925
          Length = 213

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 215 FHGEFYDPAYRRITLDLPVAVSPVKYLMFTLLLTIPNSL 331
           F G+F++     +T D+P   +P++ +M  LL   PNSL
Sbjct: 24  FRGDFHNDHENSLT-DIPPDDAPIEEVMAVLLHESPNSL 61


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 333 GELRQGCEHRTSNTCHPLRPKHPAGCHYP 419
           G  R+ C+H  +  CHP  P     C +P
Sbjct: 688 GAPRRECKHTCTAPCHPSSPCPDLRCEFP 716


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,287,880
Number of Sequences: 37544
Number of extensions: 446603
Number of successful extensions: 1182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)