Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0161
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      30   1.3  
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     30   1.8  
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              28   5.4  
SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   7.2  
SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3)                27   9.5  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +3

Query: 369 NTCHPL----RPKHPA-GCHYPTRCRNTPGYFC*SARMG 470
           N CHPL    R KH A  CH    C NT G F  +  +G
Sbjct: 583 NECHPLGISSRYKHLAHNCHSDANCTNTKGSFYCTCHVG 621


>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 316 HPEFSEENYDKDVSIVRVTHAIHF 387
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 208 YLFPWR-ILRSCIPSHYAGSSRRSEP 282
           Y FP R I ++CI  H AGS+RR  P
Sbjct: 394 YTFPSRGISKTCIAFHPAGSNRRVHP 419


>SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
 Frame = +1

Query: 106 SQPGPN*SIPTHLESMVPTVRWY----CSHQLPLPFNCYLFPWRILRSCIPSHYAGSSRR 273
           S PGPN   P   E  +  + WY     S   P   N YL+  +  +S  P H+ G    
Sbjct: 110 SMPGPNFPTPVKSERFLNLLSWYKPSLFSSYEPAT-NAYLY--KGFKSGFPLHFEGD--- 163

Query: 274 SEPGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGP 393
            E  +   +  A +HPE  +    K++   R+  +    P
Sbjct: 164 LESIQSQILLSAFDHPEIVDAKLFKELEAHRLAGSFGIPP 203


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 110 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 232
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


>SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 363 YDAHILVVILLREFGMVNSKVNIRYFTGLTATGRSS-VMRRYAGS*NSPWKQ 211
           Y+  I VV  + +   V S +N+ +FTG    GR+  V  R      +P KQ
Sbjct: 266 YEVEIQVVAAIADLEEVESFLNLVFFTGSKNLGRTDLVQHRIDTGDTTPMKQ 317


>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 402 AGCHYPTRCRNTPGYFC*SARMGNYRSRRQC 494
           + CH    C NTPG +  + + G +   ++C
Sbjct: 474 SACHVNAACTNTPGSYTCTCKQGYHGDGKRC 504


>SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3)
          Length = 199

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 458 RSTKIPWGITTPCWIMAPC 402
           R T + W    PCW+  PC
Sbjct: 137 RDTVLSWSPMIPCWVGTPC 155


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 217  PWRILRSCIPSHYAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIVRV 369
            P+  LR  +  H   +    E  +I       +HP FS   YD D++++R+
Sbjct: 1217 PYHGLRVFLGVHDITARHMDEHVQIIPSAGIYSHPRFSWRTYDSDIALIRL 1267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,937,251
Number of Sequences: 59808
Number of extensions: 513952
Number of successful extensions: 1423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)