Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0161
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    33   0.17 
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    29   2.7  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical...    27   8.4  

>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 351  CEHRTS--NT-CHPLRPKHPAGCHYPTRCRNTPGY 446
            CE   +  NT C P+  K P  CH   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 351 CEHRTSNTCHPLRPKHPAGCHYPTRCRNTPGYFC 452
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 375 CHPLRPKHPAGCHYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 506
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +2

Query: 110 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRITLDLPVAVSPVK 289
           S V + ++LP+LN  F    GI L  +        F   +    YRR   D+   ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325

Query: 290 YLMFTLLLTIPNSLRRI 340
            +  + L+ IP   + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 129 YSYPS*INGSNSALVLFSPTTTTFQLL 209
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 190 PLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 363
           PL +  +   +R LR+   SH+A  + RSE   I+++    N   F +EN +++V I+
Sbjct: 307 PLLYFVFTRQFRDLRTMWNSHFASPASRSESYAITFLSGFSN---FDDENRNENVEII 361


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 220  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 41
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 40   SY 35
             Y
Sbjct: 964  DY 965


>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 148 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEI 291
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical
           protein F41H10.6c protein.
          Length = 957

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 148 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEI 291
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 357 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 406


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical
           protein F41H10.6b protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 148 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEI 291
           S+V  +R  W C    P   +  L  W I+ + +  +Y  ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404


>Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical
           protein C14C10.3b protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 133 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 35
           E F+LD  G+L+ + +S E  SSA   G+EH++
Sbjct: 57  EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86


>Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical
           protein C14C10.3a protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 133 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 35
           E F+LD  G+L+ + +S E  SSA   G+EH++
Sbjct: 57  EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86


>AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical
           protein F16G10.14 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 241 IPSHYAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 363
           IPS  A       PGEI+    +V+ PE SEE    +V+++
Sbjct: 31  IPSTLAPEESTLAPGEITMAPGSVSTPETSEETEAPEVTMM 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,780,585
Number of Sequences: 27780
Number of extensions: 363721
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)