BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0161 (631 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.17 Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.39 Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.51 Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical pr... 30 1.2 U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 1.6 AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical ... 29 2.7 U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 28 4.8 U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical pr... 28 6.3 U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical pr... 28 6.3 U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical pr... 28 6.3 Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical pr... 27 8.4 Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical pr... 27 8.4 AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical... 27 8.4 >AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density lipoprotein receptorrelated protein 2 protein. Length = 2192 Score = 33.1 bits (72), Expect = 0.17 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +3 Query: 351 CEHRTS--NT-CHPLRPKHPAGCHYPTRCRNTPGY 446 CE + NT C P+ K P CH RC +TPGY Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897 >Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical protein M195.2 protein. Length = 419 Score = 31.9 bits (69), Expect = 0.39 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 351 CEHRTSNTCHPLRPKHPAGCHYPTRCRNTPGYFC 452 C+ +N+C L P+ GC PT CRNT C Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306 >Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical protein C30F2.1 protein. Length = 307 Score = 31.5 bits (68), Expect = 0.51 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +3 Query: 375 CHPLRPKHPAGCHYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 506 C P+RPK P G P CR PG R G NY + ++CI R+ Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149 >Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical protein T08G3.2 protein. Length = 343 Score = 30.3 bits (65), Expect = 1.2 Identities = 21/77 (27%), Positives = 34/77 (44%) Frame = +2 Query: 110 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRITLDLPVAVSPVK 289 S V + ++LP+LN F GI L + F + YRR D+ ++P K Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325 Query: 290 YLMFTLLLTIPNSLRRI 340 + + L+ IP + I Sbjct: 326 KVTVSTLVVIPGQAQFI 342 >U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical protein F07E5.1 protein. Length = 455 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +3 Query: 129 YSYPS*INGSNSALVLFSPTTTTFQLL 209 YSYPS I +S +V+ + TTTTF LL Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101 >AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical protein H23L24.4 protein. Length = 368 Score = 29.1 bits (62), Expect = 2.7 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +1 Query: 190 PLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 363 PL + + +R LR+ SH+A + RSE I+++ N F +EN +++V I+ Sbjct: 307 PLLYFVFTRQFRDLRTMWNSHFASPASRSESYAITFLSGFSN---FDDENRNENVEII 361 >U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein T20F7.5 protein. Length = 1065 Score = 28.3 bits (60), Expect = 4.8 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = -1 Query: 220 METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 41 +E SS V E+ +EP++++ +Y +LD M + RHRS +I S D H Sbjct: 907 LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963 Query: 40 SY 35 Y Sbjct: 964 DY 965 >U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical protein F41H10.6a protein. Length = 863 Score = 27.9 bits (59), Expect = 6.3 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 148 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEI 291 S+V +R W C P + L W I+ + + +Y ++RR++ GEI Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404 >U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical protein F41H10.6c protein. Length = 957 Score = 27.9 bits (59), Expect = 6.3 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 148 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEI 291 S+V +R W C P + L W I+ + + +Y ++RR++ GEI Sbjct: 357 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 406 >U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical protein F41H10.6b protein. Length = 955 Score = 27.9 bits (59), Expect = 6.3 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 148 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYAGSSRRSEPGEI 291 S+V +R W C P + L W I+ + + +Y ++RR++ GEI Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404 >Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical protein C14C10.3b protein. Length = 674 Score = 27.5 bits (58), Expect = 8.4 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 133 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 35 E F+LD G+L+ + +S E SSA G+EH++ Sbjct: 57 EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86 >Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical protein C14C10.3a protein. Length = 677 Score = 27.5 bits (58), Expect = 8.4 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 133 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 35 E F+LD G+L+ + +S E SSA G+EH++ Sbjct: 57 EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86 >AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical protein F16G10.14 protein. Length = 346 Score = 27.5 bits (58), Expect = 8.4 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +1 Query: 241 IPSHYAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 363 IPS A PGEI+ +V+ PE SEE +V+++ Sbjct: 31 IPSTLAPEESTLAPGEITMAPGSVSTPETSEETEAPEVTMM 71 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,780,585 Number of Sequences: 27780 Number of extensions: 363721 Number of successful extensions: 911 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 911 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1385109898 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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