Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0161
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 393 WAEVDGMCYSYDAHILVVILLREFGMV-NSKVNIRYFTG 280
           W +  G C S   HI++V L  EFG++ + K++  ++ G
Sbjct: 46  WFKAIGTCGS---HIIIVGLFYEFGLITHVKLSSDWYMG 81


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 188 YHYLSTATCFHGEFYD-PAYRRITLDLPVAVSPVKYLMFTLLLTIPN 325
           + +LS+    + + Y+ P Y ++TLD  V   P+   M+    TIPN
Sbjct: 621 FFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDRPMWAWNFTIPN 667


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 188 YHYLSTATCFHGEFYD-PAYRRITLDLPVAVSPVKYLMFTLLLTIPN 325
           + +LS+    + + Y+ P Y ++TLD  V   P+   M+    TIPN
Sbjct: 621 FFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDRPMWAWNFTIPN 667


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 366 SNTCHPLRPKHPAGCHYP-TRCRNTPGYF 449
           S++C    P H     Y  T CR  PGYF
Sbjct: 276 SHSCEAC-PAHSKSSDYGFTECRCDPGYF 303


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 203 LKGSGSW*EQYQRTVGTIDSR 141
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 419 WIMAPCWMFGPKWMACVTRTMLTSL 345
           W++ PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 419 WIMAPCWMFGPKWMACVTRTMLTSL 345
           W++ PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 419 WIMAPCWMFGPKWMACVTRTMLTSL 345
           W++ PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 575 RDHDPCLFPAVF 540
           R+HDP  FP  F
Sbjct: 400 REHDPAKFPPSF 411


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +1

Query: 229 LRSCIPSHYAGSSRRSEPGEISYVHFAVNHPEFSEENY 342
           + S  PS+  G S    P   S    +V+      ENY
Sbjct: 76  ITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSENY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,727
Number of Sequences: 438
Number of extensions: 4805
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)