Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0161
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 31 0.63
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 31 0.63
At2g39855.1 68415.m04895 expressed protein 30 1.1
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.1
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.1
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.1
At4g36880.1 68417.m05229 cysteine proteinase, putative strong si... 29 2.5
At2g47820.1 68415.m05968 expressed protein 29 2.5
At1g19485.1 68414.m02427 AT hook motif-containing protein contai... 28 4.4
At4g11510.1 68417.m01849 expressed protein ; expression support... 28 5.9
At4g33600.1 68417.m04773 expressed protein 27 7.8
At4g11530.1 68417.m01850 protein kinase family protein contains ... 27 7.8
At1g61600.1 68414.m06941 expressed protein 27 7.8
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.1 bits (67), Expect = 0.63
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -2
Query: 447 NTLGYYDTLLDNGTLLDVWAEVDGMCYSYDAHILV 343
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.1 bits (67), Expect = 0.63
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -2
Query: 447 NTLGYYDTLLDNGTLLDVWAEVDGMCYSYDAHILV 343
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At2g39855.1 68415.m04895 expressed protein
Length = 151
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 605 NRRRICYQSRRDHDPC-LFPAVFFVGHNEFELVGLPSDTLPP*TVVPHPSRSTKI 444
N+ R YQS PC L ++++ G + + D + P V H R+TK+
Sbjct: 79 NKERKSYQSEETQPPCNLSSSIYYGGQDNYSSSTTNPDAVSPYIFVLHFDRNTKM 133
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 203 LKGSGSW*EQYQRTVGTIDSRWV 135
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 203 LKGSGSW*EQYQRTVGTIDSRWV 135
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 203 LKGSGSW*EQYQRTVGTIDSRWV 135
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At4g36880.1 68417.m05229 cysteine proteinase, putative strong
similarity to cysteine proteinase COT44 precursor
SP:P25251 from [Brassica napus] (Rape)
Length = 376
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 519 RACGVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNGTLLDVWA 388
+A V +Y+AA+NG E ++ G + + D GT WA
Sbjct: 128 KAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWA 171
>At2g47820.1 68415.m05968 expressed protein
Length = 805
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 134 LPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRITLDLPV 271
LP + +Q ++LT L TCFH E P + +T LP+
Sbjct: 36 LPRVGDQYQADLPVLLTESDRLKLITCFHSE--PPLQKLLTFGLPI 79
>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
Pfam profile: PF00730 HhH-GPD superfamily base excision
DNA repair protein; contains Pfam PF02178: AT hook
motif; contains Pfam PF00400: WD domain, G-beta repeat
(5 copies); contains Prosite PS00354: HMG-I and HMG-Y
DNA-binding domain (A+T-hook)
Length = 815
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 474 SSPSEQINKNTLGYYDTLLDNGTLLDVW 391
S + +NK+++GY LL NG+ L+VW
Sbjct: 367 SYAGDSLNKHSMGYLAVLLGNGS-LEVW 393
>At4g11510.1 68417.m01849 expressed protein ; expression supported
by MPSS
Length = 85
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 333 GELRQGCEHRTSNTCHPLRPKHPAGCHYPTRCR 431
G+ + GC+H P P H GC RCR
Sbjct: 42 GDRQPGCDHGNCPPDQPANPYH-RGCEKSKRCR 73
>At4g33600.1 68417.m04773 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 142 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 234
L +MVP V W HQ P L+ W LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +2
Query: 140 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRITLDLPVAVS 280
+LN F L + Y+ST TCF+G F YD RRI L V+
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILSSLASKVT 53
>At1g61600.1 68414.m06941 expressed protein
Length = 421
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 342 RQGCEHRTSNTCHPLRPKHPAGCHYPTRCR 431
++G E RTS + HP RP+ G R R
Sbjct: 172 KKGWELRTSRSLHPRRPREALGLDEELRAR 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,887
Number of Sequences: 28952
Number of extensions: 335651
Number of successful extensions: 867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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