Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0160
         (480 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.5  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   4.5  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +2

Query: 29  CALLLQRTVSIW-ENGMLYFT-----SFIGEALRSVNRCCCLST 142
           C  L ++ V IW +N  + +      +  G+A    N+CCCL T
Sbjct: 153 CLRLSEKQVKIWFQNRRVKYKKEDLPAAAGKASNG-NKCCCLRT 195


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = +1

Query: 292  LDRNYTPRXWPTLVNAVDXXXXXXXXXXQPSATIPSLFA 408
            LD N     W T    +            PSA++P+  A
Sbjct: 1272 LDSNLKYEFWVTAATTIGEGQPSKKVTVSPSASVPAKIA 1310


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 413 DNANKLGIVAEGCSQDIDELSN*STALTSV 324
           + ANK  I+  G   DID+    +  +TSV
Sbjct: 218 NEANKTKILLVGLKIDIDQEEERNVVVTSV 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,289
Number of Sequences: 336
Number of extensions: 1933
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)