Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0160
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  37   0.007
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            34   0.053
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.28 
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      30   1.1  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         29   2.6  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   3.5  
SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_34947| Best HMM Match : Vps52 (HMM E-Value=0.0066)                  27   8.0  
SB_8307| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-22)           27   8.0  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 222 LQRFRHTRSPRAEDVNVIAVDWSPGSKL-YTEGXANARQCGRLIAEFINIL 371
           + R RH    + ED NVI  DWS G+ + Y +  AN R  G  I E I  L
Sbjct: 629 MNRIRHALI-KQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFL 678


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 252 RAEDVNVIAVDWSPGS---KLYTEGXANARQCGRLIAEFINILTTTFSYDSELIRIV 413
           + E +NVI VDW  G+    LY     N R  G  +AE I  +   F +D   + ++
Sbjct: 50  KREPMNVITVDWQSGADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLI 106


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 34.3 bits (75), Expect = 0.053
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 RAEDVNVIAVDWSPGSKL-YTEGXANARQCGRLIAEFINIL 371
           R  D NVI VDW  G+K+ Y    AN R  G  +A F+  +
Sbjct: 121 RKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTI 161


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 258 EDVNVIAVDWSPGSK-LYTEGXANARQCG 341
           +DVNV+  DW PG+  +Y +  AN R  G
Sbjct: 131 DDVNVVITDWGPGADGMYWQATANTRLVG 159


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 261 DVNVIAVDWSPGSKL-YTEGXANARQCGRLIAEFINIL 371
           D NVI VDW  G+   +T   AN R  G   A  + IL
Sbjct: 143 DFNVIIVDWMRGAWFPFTRAVANTRLVGAQTARLLQIL 180


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 42  CSVQFQFGRTGCCISPLSSGKPSGQXTVVAVCQLYYDL 155
           C +Q   G T C  S  + G PSG    V   +L Y L
Sbjct: 415 CWLQVDLGGTHCVTSVATQGNPSGNNDYVKKYRLQYSL 452


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 76  VVFH----LFHRGSPQVSXPLLLSVNSIMTYSFSLARRTIFTIHNHGETV 213
           VV+H    +FH+  P V+ P+L S +S + +  ++A+     +H  G  +
Sbjct: 68  VVYHQPPIVFHQPPPAVNQPMLYSHDSFVMHPAAVAQHVNSVVHEGGRYI 117


>SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 39  YCSVQFQFGRTGCCISPLSS---GKPSGQXTVVAVCQLYYDLFVLPRSPHHLHDTQS 200
           Y + + QF +TG C S LSS   G P G       C L YD+  LP     L D Q+
Sbjct: 233 YLTNRKQFTQTGSCKSSLSSISYGVPQG-------CLLVYDVCCLPGLRCLLSDVQA 282


>SB_34947| Best HMM Match : Vps52 (HMM E-Value=0.0066)
          Length = 383

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 172 RRTIFTIHNHGETVAGNFNAFVIPAHLALKM 264
           R TIFT+ N G  +       +I  H A KM
Sbjct: 109 RSTIFTLGNRGNVITSELEEPIIVPHTAQKM 139


>SB_8307| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-22)
          Length = 370

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 42  CSVQFQFGRTGCCISPLSSGKPSGQXTVVAVCQLYYDL 155
           C +Q   G T C  S  + G P G    V   +L Y L
Sbjct: 105 CWLQVDLGGTHCVTSVATQGNPKGNNDYVKKYRLQYSL 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,019
Number of Sequences: 59808
Number of extensions: 266156
Number of successful extensions: 633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)