Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0160
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -1

Query: 243 GYDESVEVSSDSFTVIVYREDGAASEGERISHNRVDRQQQRXTDLRASPMKEVKYNIPFS 64
           GY  ++ +  D  TV   R     S+G R +HN +++   R   LR + ++++K  +P  
Sbjct: 23  GYASTMPMPDDMRTV-TKRPKTKKSQGSRTTHNELEK--NRRAHLR-NCLEKLKVLVPLG 78

Query: 63  QIETVR 46
             ET R
Sbjct: 79  P-ETSR 83


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 237 HTRSPRAEDVNVIAVDWSPGSKLYTEGXAN 326
           HTR   A D+  +   +    KLYT+   N
Sbjct: 330 HTRISTAIDLGYVVDSYGNHVKLYTKQGLN 359


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 237 HTRSPRAEDVNVIAVDWSPGSKLYTEGXAN 326
           HTR   A D+  +   +    KLYT+   N
Sbjct: 330 HTRISTAIDLGYVVDSYGNHVKLYTKQGLN 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,664
Number of Sequences: 438
Number of extensions: 2483
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)