Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0160
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa... 29 1.6
At2g35010.1 68415.m04295 thioredoxin family protein similar to S... 29 2.1
At2g28870.1 68415.m03509 expressed protein 29 2.1
At4g30935.1 68417.m04392 WRKY family transcription factor contai... 28 3.7
At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger) fa... 27 5.0
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 27 5.0
At1g54430.1 68414.m06209 hypothetical protein 27 6.5
At1g23970.1 68414.m03026 expressed protein contains Pfam profile... 27 6.5
At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger) fa... 27 6.5
At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger) fa... 27 6.5
At5g56260.1 68418.m07021 dimethylmenaquinone methyltransferase f... 27 8.7
>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 146
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 205 HRDCVS*RWCGERGRT 158
HRDC+ RWC E+G T
Sbjct: 46 HRDCIQ-RWCDEKGNT 60
>At2g35010.1 68415.m04295 thioredoxin family protein similar to
SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
contains Pfam profile: PF00085 Thioredoxin
Length = 194
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 121 PLLLSVNSIMTYSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAL 258
PL+L+ NSI S +AR ++FT N G ++ NF+ +P +L
Sbjct: 34 PLVLAPNSI---SSLIARNSLFTASNIGPSIDFNFSNTSLPHRRSL 76
>At2g28870.1 68415.m03509 expressed protein
Length = 156
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 460 EFLAAIPAMCPPRPSPTMRISSES*LKV 377
+ L+A+P +CPP P R+ S S LKV
Sbjct: 93 QILSAMPRICPPAPRKPKRVPSRS-LKV 119
>At4g30935.1 68417.m04392 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 466
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 161 SPSLAAPSSRYTITVKLSLETSTLSS 238
SPSLAA S T+T LSL+ +T S+
Sbjct: 107 SPSLAASSDSLTVTPCLSLDPATAST 132
>At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger)
family protein contains InterPro Entry IPR001841
Zn-finger, RING
Length = 218
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 205 HRDCVS*RWCGERGRT 158
HR+C+ RWC E+G T
Sbjct: 46 HRNCIQ-RWCNEKGNT 60
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 228 VEVSSDSFTVIVYREDGAASEGERISHNRVDRQQQRXTD 112
VE SS + V+V DG + H R+ Q+Q+ D
Sbjct: 271 VEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVD 309
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 49 YSFNLGERDVVFHLFHRGSPQVS--XPLLLSVNSIMTYSF 162
+S N+GERDV+ H G Q+S PL +++ + + +
Sbjct: 491 FSKNIGERDVIVHHKSSGLQQISDLHPLFMTLQYPLLFPY 530
>At1g23970.1 68414.m03026 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 373
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 222 VSSDSFTVIVYREDGAASEGERISHNRVDRQQQRXTDLRAS---PMKEVKYNIPF 67
+SS T++ + D AAS ++ RVD QQ + S P EV PF
Sbjct: 100 MSSFYMTLLAHDPDPAASSSQKTFQVRVDEQQFGTLGINCSIARPKHEVSTKTPF 154
>At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 205 HRDCVS*RWCGERGRT 158
HR CV RWC E+G T
Sbjct: 83 HRKCVQ-RWCNEKGNT 97
>At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 205 HRDCVS*RWCGERGRT 158
HR CV RWC E+G T
Sbjct: 83 HRKCVQ-RWCNEKGNT 97
>At5g56260.1 68418.m07021 dimethylmenaquinone methyltransferase
family protein similar to bacterial
S-adenosylmethionine:2-demethylmenaquinone
methyltransferases; contains Pfam profile PF03737:
Dimethylmenaquinone methyltransferase
Length = 166
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 395 GIVAEGCSQDIDELSN*STALTSVG 321
GIV GC +D+DE+++ + ++G
Sbjct: 95 GIVVNGCVRDVDEINDCDVGVRALG 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,423,067
Number of Sequences: 28952
Number of extensions: 175071
Number of successful extensions: 440
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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